Luteitalea pratensis: LuPra_01231
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Entry
LuPra_01231 CDS
T04394
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abac
Luteitalea pratensis
Pathway
abac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LuPra_01231 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abac03019
]
LuPra_01231 (rhlE_1)
Enzymes [BR:
abac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LuPra_01231 (rhlE_1)
Messenger RNA biogenesis [BR:
abac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LuPra_01231 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
UvrD-helicase
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMY08043
UniProt:
A0A143PIF5
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All DBs
Position
1451332..1452969
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AA seq
545 aa
AA seq
DB search
MAGSESCGDGRLGEPALPDSRYLTPGSRFPVPVNCGVPFSHLGLHPSLTRALKDLGFTRP
TPIQSDAIGPALAGRDVLACAATGSGKTAAFLLPIVHKLLDKSRGTTRALILTPTRELAA
QILEDLDNIAVHTPISGAAVFGGVGMGPQEHAFRRGVDVIVATPGRLLDHFRSPYAKLSG
LEFLVLDEADRMLDMGFLPDIKRVLKHLPTRRQTLFFSATMPAPIISLTRELLDNPATIN
LARQAAPAVGITQAIYPVSQDLKGALLAALLSRGVMTQALVFTRTKHRADRLTAYLERQG
VKAARIHGNRSQAQRTLALAGFKSGEYPVLVATDIAARGIDVSELGHVVNFDVPVAAEDY
IHRVGRTGRAEATGEAFTFVSREEEAEWNLIEKVVGKRLPRVQLPDFDYTARPDARLEIP
IAERIAAIRKRKAEERARAQAKAAARAARPAGSVRGSATGPLTRPGQSRHGTTGQGAGAP
PQGQRSSSGPARPSGQGGGQGRPSSDPSHTRPAPAMHARPHGSGRPGGGRPGGGPGGRGP
GRRTR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggccggctcggagagctgcggtgatggccggctcggagagccggccctacctgactcc
cggtacctgactcccggttcccggttcccggttcccgtaaactgtggtgtgccattctca
cacctcgggctgcatcccagcctcacgcgcgccctcaaggaccttgggttcacgcgtccg
acccccatccagtccgatgccatcggcccggccctcgccggacgagacgtgcttgcctgc
gcagccaccggcagcggcaagaccgcggctttcctgctgccgatcgtccacaagcttctc
gacaagtcgcgggggacgacgcgggcactcatcctgacccccaccagggagctggccgcg
cagatcctcgaagacctggacaacattgcggtgcacacgccgatcagcggggcggccgtc
ttcggcggcgtcggcatggggccgcaggagcatgccttccgccgcggcgtcgacgtgatc
gtcgccacgcccggccggctgctggaccacttccgatcgccctacgccaagctgtcgggc
ctcgagttcctcgttctcgacgaggccgatcgcatgctcgacatgggcttcctgcccgac
atcaagcgggtgctcaagcacctgcccacacggcgccagaccctgttcttcagcgccacg
atgccggctccgatcatcagcctgacgcgcgagctcctcgacaacccggcgacgatcaac
ctggcgcgccaggccgcgcccgccgttggcatcacccaggcgatttacccggtttctcag
gacctgaagggtgcgctgctcgcggcgctgctgtcgcgcggcgtaatgacgcaggcgctg
gtgttcacgcggaccaagcatcgcgccgatcgcctgacggcctacctcgagaggcagggc
gtcaaggccgcgcgcatccacggcaaccgatcgcaggcgcagcgcacgctggcgctggcc
gggttcaagagcggcgagtatccggtcctggtcgcgaccgacatcgccgcccgcggcatc
gacgtctctgaactgggccatgtcgtgaacttcgacgtgccggtcgcggccgaggactac
atccaccgtgtcggccgcacgggtcgggccgaggccaccggcgaggcgttcacgttcgtc
tcgcgcgaggaagaagccgagtggaacctgatcgagaaggtcgtcggcaaacggttgccg
cgcgtccagttgcccgacttcgactacacggcgcggcccgacgcgcgcctcgagatcccg
atcgccgagcgtattgccgccatccgcaagcgcaaggccgaggagcgggctcgcgcccag
gccaaagccgcggcccgggcagcacggccggccggcagcgtgcgcggtagcgccacgggg
ccgctgacccggcctggtcagtcacgtcacggtacgaccgggcagggcgccggggctccg
ccacagggacagcgctcgtcgtccgggccagcgcgtccgtcagggcagggcggtggacag
ggacgtccctcgagcgatccgtcacacacacgcccggcgccagccatgcacgcccggccg
cacggcagtggtcgtcctggtggaggacggcccggtggcggtcctggcgggcgaggcccg
gggcggcgtacgcgctag
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