Luteitalea pratensis: LuPra_06173
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Entry
LuPra_06173 CDS
T04394
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abac
Luteitalea pratensis
Pathway
abac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LuPra_06173 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abac03019
]
LuPra_06173 (deaD)
03009 Ribosome biogenesis [BR:
abac03009
]
LuPra_06173 (deaD)
Enzymes [BR:
abac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LuPra_06173 (deaD)
Messenger RNA biogenesis [BR:
abac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LuPra_06173 (deaD)
Ribosome biogenesis [BR:
abac03009
]
Prokaryotic type
rRNA helicases
LuPra_06173 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_22
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AMY12889
UniProt:
A0A143PYL9
LinkDB
All DBs
Position
complement(7297826..7299631)
Genome browser
AA seq
601 aa
AA seq
DB search
MSTDPSSEAPTGFSSLGLSDALVSAVSALGYEEPTPIQREAIPVLLDGKDVLGMAGTGTG
KTAAFALPMIELLSRKGAKSLAPRGLVLVPTRELAMQVAEALHKYARGTDLAVAPLYGGA
PMDVQIRALRRGVSIVVATPGRALDHLRRHTLDLRALRIVVLDEADEMIDMGFAEDIESI
LANAPDERQTALFAATMAPRLESIASTHLTDPVRVAIAKEKRAAGKLPRIRQVAYLVPRQ
QKTAALGRVLDVETPSSAIVFCRTRTEVDELTDTLAAHGYGAKALHGGMEQKARDRVMQM
FRTGQADVLVATDVAARGLDIEHVSHVVNYDLPMTPEVYVHRIGRTGRAGREGMAISLVD
PRQHRQLRSIEGAVRSKIEILPIPTEADLQARRLDTTLAAVRAQIVEGGLEQARAVVDRL
AQEFDVLDVAAAAIRLLHDDPAGTTTTKGKAKGGSKREAGEAAAGPSLDEAMAAAERRPA
YSERPARGRDDEERPRRAREGKEGPPSRPSRAGGPRGAGGARAVLHINIGKAAGVRPADL
VGAIAGEADVDSGVIGAIRIGEESSLVDVPEALATRIMISLRNAKVRGRRVMVRKDRGDR
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccgatccctcctccgaagcccccaccggcttctcctccctcgggttgtccgat
gccctcgtctctgccgtgtccgcgctcggctacgaggagcccacccccatccagcgcgaa
gcgattccggtgctgctcgacggcaaggacgtcctcggcatggctggcacgggcaccggc
aagaccgccgccttcgccctgccgatgattgaactgctgtcgcgcaagggcgccaagagc
ctcgcccctcgcggtctcgtgctggtgccgacgcgcgaactggccatgcaggtcgccgag
gcactgcacaagtacgcccgcggtacggacctcgcggtggctccgctctacggcggcgca
ccgatggacgtgcagatccgcgccctgcgccgcggcgtgtcgatcgtcgtcgccacgcct
ggacgggcgctcgatcacctccgccgtcacacactcgatctgcgcgcgctgcggatcgtg
gtgctggacgaggccgacgagatgatcgacatgggttttgccgaggacatcgagagcatc
ctggccaatgccccggacgagcgacagacggcgctctttgcggcgacgatggcgccacgg
ctggagtccatcgcgtccacgcacctgaccgatccggtgcgggtggcgatcgccaaggag
aagcgtgcggcgggcaagctgccacgcatccgccaggtggcctacctggtgccgcgccag
cagaagaccgcggcgctcgggcgcgtgctggacgtcgagacgccctcgtcggcgatcgtg
ttctgccggacgcgcaccgaggtcgacgagctcacggacacgctcgcagcccacggctac
ggcgccaaggcgctgcatggcggcatggagcagaaggcgcgcgatcgcgtgatgcagatg
ttccgcaccgggcaggcggacgtgctcgtcgccaccgatgtcgcggcgcgtggactcgac
atcgagcacgtctcccacgtcgtcaactacgacctgccgatgacgcccgaggtgtacgtg
caccgcatcggccgcaccggccgcgccggtcgcgagggcatggccatctccctggtcgat
ccgcgacagcatcgccaactgcggtcgatcgagggagccgtccggtcgaagatcgagatc
ctcccgatcccgaccgaagcggacctgcaggcacgtcggctggatacgacgcttgccgcc
gtccgcgcgcagatcgtcgaaggcggcctcgagcaggcccgtgccgttgtcgatcgtctc
gcgcaggagttcgacgtgctcgacgtcgccgcggcggcgatccgcctgctgcacgacgat
ccggctggcaccacgacaacgaaggggaaggccaagggtgggtcgaagcgcgaggccgga
gaggcggcggcaggaccgtccctcgacgaagccatggccgccgccgagcgtcggccggcg
tactccgaacgccctgcccgcggccgggatgatgaggaacgaccccgtcgcgctcgtgag
ggcaaggaaggtccgccgagtcgtccgtcgcgcgccggcgggccacggggcgccggtggt
gcccgcgccgtgctgcacatcaatatcggcaaggcagcgggtgtgcggccggccgatctc
gtcggcgcgatcgcgggcgaggccgacgtcgacagcggcgtcatcggcgccatccgcatc
ggcgaggagtcgtcgctcgtggacgtccccgaggcactcgccacgcggatcatgatttcg
ttgcgcaacgccaaggtgcgcggccgccgcgtcatggtgcgcaaggaccgcggcgaccgc
gagtag
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