Acinetobacter baumannii D1279779: ABD1_16110
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Entry
ABD1_16110 CDS
T02491
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abad
Acinetobacter baumannii D1279779
Pathway
abad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABD1_16110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abad03400
]
ABD1_16110 (mfd)
Enzymes [BR:
abad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABD1_16110 (mfd)
DNA repair and recombination proteins [BR:
abad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABD1_16110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGH35496
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All DBs
Position
1721458..1724919
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIATQHSSLLVLVARNNQHVAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGVLLISASTLAQRVAPY
SWVLGEHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQESPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEGRSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTIYLPKNCIVITTNDIDIDLTNFW
KEVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRMLVSAETIEEKAGALNLKTE
QPPKLPVDPKKEKPFSAVKKYIDEANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFQISQFAIAITNAPLDRGLLLTDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEEYEKRIQFI
NDLLQKLMSELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttgcaacagctcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagcagctttattgcttaaagaaattgccactcag
cattcttctttattggtattagttgctagaaacaaccaacatgttgctcaattagaaagt
gaacttgagttttatggagttaagccgacaatttttccggattgggaaattttgccttat
gaccgtttatctccccatcaagatattgtgtcagaacgtcttgctattttatctaatatg
ccccagcaaggcgtattactgatttcagcaagtaccttggctcaacgggttgcgccttac
tcatgggtattaggagaacactttgatataaaagtgggtcaaaaatttgatttagaacaa
caaaaattaaggttagttcaggcgggctaccacttagtagatacagtttatgaccatggt
gagtttgctgtacgcggtagtattatggatatttttgcatctgggcaagaatctccgatc
cgcatagatttatttgacgatgaaattgattctttaaaattctttgaccctgaaactcaa
agaacaacaaccacactaaaaagttttacggttttacccgcgaaagaattccctttaaaa
gaaggacgttcagtttttagagaccgttattctgagttttttcctactgccaatcctaag
aaaaatccaatttatcaggacgttttagatggtatagcatcgcctggcattgaattttat
ttaccgctattttttgataaagaacaaatgcagtcacaaagtatgtttacaatatactta
ccaaagaattgcattgtaattacaactaatgatattgacattgatttaacgaacttctgg
aaagaagttatgcgtcgttatgaagaccggcgccataatatggatcaacctattcttgct
ccagaagaactatttatttctccaaatcatttgttaagtgctttaaaccagtttccacga
atgcttgtaagcgcagaaactattgaagaaaaagctggtgcacttaatcttaaaactgaa
caaccacccaagttgccagtcgatccgaaaaaagaaaaaccatttagtgccgtaaaaaaa
tatattgatgaagcaaatcatcctgttctattggttgcggaaagtgcaggacgtcgcgaa
agcttaaaagatgcgttgcgttcaagtttaggtgagattccgaatgtagagaattttgag
caattccaaattagtcagttcgcaattgctattactaatgcgcctttagatcgtggttta
cttttaactgatcaattaacggttatttcagaaaatcagctttacgagcaccgagttgta
cagcgtcgtcgcaagcgtcaacaggaagtttcagaagagtttttgattcgaagcttaact
gagctaagcattggtgctcctgttgtacatatcgatcatggtgtggggcgttatgctggt
ttaattacactcgcgattgaaggacaagactatgagttcttacaactagattatgccgaa
gatgcaaaagtctatgttccagtaacgaacttgcatctaattagccgttatagtggtggc
gacccggatttagcaccgttacataaaatcggaactgatgcttggagtaaagctaagcgt
aaagcattagagcaaattcatgacgttgcagctgagcttttacatattcaggcacgtcgt
cagtcaaaacctggcttcgcttttgaactggatcagtcgctctatatgcaatttgcaagc
ggttttgcgtatgaagaaacccttgatcaggctaatgcaattgaagccacactctatgat
atgcagcaagcaaaaccaatggataggttggtgtgtggtgacgtaggttttggtaaaacc
gaagtggccatgcgtgcagcatttgtagcggtacaaaatggcaaacaggtcgctgtttta
gttcctacgactttactagctcaacaacattatgagtcttttaaagaccgttttgctgat
tggccagtacgtattgaagtgctctcacgttttggttcaaacaaaacacatttgaaaaat
attgaagacttggcaaatggtaaagtcgatattgtggtaggtacacataagcttctacaa
gagaatgttcagtttaaagatttaggcttaatggttgtagacgaggagcatcgctttggt
gtgcgtgataaggagcgtatcaaagctttacgtgccgatgttgatatgttgacacttaca
gcaacgccaattcctcgtacgcttaatatggctttttcgggtatgcgtgatttgtcgatt
attgcgactccgccagcccgtcgattagcagtaaaaacctttgtgcaagagcatacagat
gcttcaatcaaggaagcgattttgcgtgagttacttcgtggtggacaagtttatttctta
cataatgaagtagagaccattgagcgagctgccgaaaatattcgtgtgcttgtacccgaa
gcacgtgtagcggtagcacatggacaaatgcgtgaacgcgaacttgagcaagttatgcag
cagttctatcacaaagaatataatgtgctggtgtgctcaaccattattgagacaggtatc
gatgttccaaatgcaaatacaattttaattgaacgtgcggataaacttgggttagcgcaa
ttacaccagttacgtggccgtgtaggtcgttcgcatcaccaagcatatgcgtatttatta
gtaccttcgattaaacacttaaaaggtgatgccgaaaaacgccttgatgcgattcaacgt
gcttcgacattaggtgcaggctttatgctcgctacggaagatttggaaattcgtggagca
ggcgaattgttaggcgaacaacaaagtggctcaatgcaggcgataggatatagcttgtat
atggaaatgcttgagaaagcgactaaagcaattcaacaaggtaaaaccccgaattttgat
gctccattgtcgttaactgccgaaattaacttacatattcctgcacttattccagatgat
tatctgggggatgttcatcaacgtctattattctataaacgtattagtaataccgataca
caggaaaaactagataacatccgtatggagcttattgaccgtttcggtattccaccgcag
tcggttaagcacttgtttagcgtgcatcaaatccgtttgaaagcagaacatttaggtatt
acgaaaattgatattaatactcaaggtggaaatattgagttttcaccagatacgccagtt
caggccattagtattattcagttaatgcaaaaaaatccgacctattaccgtatggaaggc
ggacaacgtttgaaggtgatggtgcagcttgaagagtatgaaaaacgaattcaatttatc
aatgatttattgcaaaaattgatgagtgaactacatgcctga
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integrated database retrieval system
