Suicoccus acidiformans: CL176_06150
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Entry
CL176_06150 CDS
T05652
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
abae
Suicoccus acidiformans
Pathway
abae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL176_06150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abae03019
]
CL176_06150
Messenger RNA biogenesis [BR:
abae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CL176_06150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
DUF2187
Motif
Other DBs
NCBI-ProteinID:
AXY25610
UniProt:
A0A347WKK3
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Position
complement(1299616..1301364)
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AA seq
582 aa
AA seq
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MNTVKIIPLGGVREEGKNMYVIEVNDSIFILDCGLVFPEESMLGIDAIIPDFTYVEENRD
RVQGVFLTHGHDDAIGGLPYLLDIIDVPVFGTELTIELAKLSAKKQGLTDRLDQFYKVDA
DTEIEFEDATVSFFRTTHTIPDSVGIVVHTPEGNVVYTGDFKLDPSASELYQTDYDRLIE
LGKEGVLALLSDSADAESPIRSVSDSTIIKDMESIFMNAKGRVVVAAIASNISRIQQLLE
VAHKTQRQIFFADDDLTDIIDLAIKLDKIQLPSRDVIGKSDRLNDTHDDEVIILQTGGVG
EPIQGLNAMATGHHPKANLKEGDFVYMATTPSTAMETAMAKTKDLVYRAKAETRTINENH
KVSGHASQDDLKFMLNFLKPTYLIPVNGESRMLAAHADVAEEIGYHPNQIFRANIGDVIE
YKNNKMTMTATIQAGDVLVDGSGVGDIGNVVLRDRRILSEDGIFIVVATISRRLGKVLVG
PQITSRGFVYMKTSIDLIQVCSDITLDVLEEHLASKQFDWGDLKNDLREKLGKYLFKETQ
RRPVILPIIMEASSYQPDQNPSNQHKQSKGKQNRRKKSRKQA
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagtcaaaattatccctctaggaggcgtacgcgaagagggcaaaaatatgtac
gtcattgaggtgaatgattccatctttattctggactgcggactagtctttcctgaagag
tccatgctaggtatcgatgcaattattcctgattttacatatgttgaggagaatcgtgac
cgggtgcaaggggtcttcctaacccacggacatgatgatgccatcggtggcttgccttac
ttattggatattattgatgtacctgtttttgggactgagttgacgattgagttggcgaag
ctttctgcaaagaagcaggggctaactgaccgcctggatcaattctataaggttgatgcc
gatactgaaattgaatttgaggacgcgacggtgtccttctttcggacaacccataccatt
ccggattctgtagggattgtcgtccatacgccggaagggaatgttgtctacacgggtgac
tttaaactcgatccaagtgctagcgaactttaccaaacggattatgaccgcttaattgaa
ttaggcaaagagggcgtcttggctctcttgagtgattcggcggacgctgagagcccgatt
cgttcggtcagtgattcgaccattatcaaagatatggagagcattttcatgaatgccaaa
gggcgggtagtcgttgcagcgattgccagcaatatttcgcgcattcaacaattattagaa
gtagctcataagactcagcgccaaatcttttttgccgatgatgatttgacggatattatt
gacttagctattaaattggacaaaatccagctaccaagccgggatgtaattggcaaaagt
gaccgattaaacgatacccatgatgatgaagttatcattctgcaaacgggcggggttggc
gaaccgattcaaggcttaaatgcgatggcaacgggacatcatccgaaagccaacttaaaa
gaaggcgatttcgtctatatggctactacaccttcaacagctatggaaactgccatggct
aagacgaaggacttggtttaccgggcaaaggctgaaacccgcacgattaacgagaatcat
aaggtttctggtcatgccagccaagatgatttgaaatttatgttgaacttcttaaagcca
acctacctcatcccagtcaacggcgaaagtcgcatgctggcagcacacgccgatgtcgcc
gaagaaattggctaccatccgaaccaaattttccgagcaaatattggcgatgtcattgaa
tacaaaaacaacaaaatgaccatgacagctaccattcaagcaggcgatgtcctagttgac
ggatccggcgtgggcgacattggcaacgtggtgctgcgtgaccgccgcattctcagtgaa
gacggtattttcattgtggtggcgacaatttcccgccgcttgggcaaagtcttagttggg
ccgcaaattacgtcccgtggctttgtctatatgaagactagcattgatttaattcaagta
tgttccgatattaccctcgatgtcttagaagagcatttggctagcaagcaattcgattgg
ggtgacttgaagaacgacttacgcgagaaactcggcaagtatctcttcaaagaaacccag
cgtcgtccggtaattctaccgattattatggaagcctccagctaccaaccggaccagaat
ccgtcaaaccagcataaacagtctaaaggcaaacaaaatcgccgcaaaaaatctagaaag
caagcatag
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