Actinobacteria bacterium: IMCC26256_111730
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Entry
IMCC26256_111730 CDS
T03963
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
abai
Actinobacteria bacterium
Pathway
abai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC26256_111730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abai03019
]
IMCC26256_111730
03400 DNA repair and recombination proteins [BR:
abai03400
]
IMCC26256_111730
Enzymes [BR:
abai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMCC26256_111730
Messenger RNA biogenesis [BR:
abai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC26256_111730
DNA repair and recombination proteins [BR:
abai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IMCC26256_111730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Zn_ribbon_Top1
DUF559
Zn_ribbon_GRF
DUF2726
SPOC
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AKL74000
LinkDB
All DBs
Position
complement(1811428..1815159)
Genome browser
AA seq
1243 aa
AA seq
DB search
MSEIECPVCGAEMVIKTARKGFNAGGQFYGCSQWPHTGCNGKRNLDPADQVDAPEGGVAK
NQGRVAFERRIEWLDGSMNADGWVCRYTHGGASFRSIDFPQAALNRVSTCWIATEDLESY
EPSDPETSRVVDLLMKILQRGSAPPLDPETEKALLTKFGLGERIRDLGEEDLAIRLQPKF
EIDEALGEASWGEQVHEFTSWPFDSKEERQFYDDVLPAILGSDWMPWVIPQASLDRLLRA
KGVETAGDRRVDFLVSAPWIAPFVIELDGAQHQDAGHVDDERDQSLADVGIPVFRVATRE
LTTQGEGLEAIRQHCDVDIPHAESIQIDLLQTAAEIPRLAIGLLEAIRRGFLAGDRWVVE
VRCRTALPTELVAPYLNILAAAAALWGDRSLAPARIEFVGQVSVAYDLNDGVYGVSSEAV
TNAVDVVLHLEGEKTPASALPKRDGYIPQIVIRSTLLPIKVRDPQGRAGNRISVQTDREA
TTSALKTLLRHIFAKADFREGQSEGILEILGGGDCVVLLPTGAGKSIIYQLAGLCMPGRT
LVIDPLIALIEDQVQGLQRQGIDRIAWVTGDAVERFGAAAVLDSVENADALFMLVSPERL
QDDKFRSALQRLSALALINLAVIDEAHCVSEWGHDFRTAYLNLGSTIARTCVKDAHSGRP
PLLALTGTASRAVLRDVLFQLSITEKFGTVVRPRSFDRKELKFRIDSSTPKSAEATLEGA
LAALPADFGATPANFYKPRGEKTNSGLIFCRVVNGKKGVIDVAALASRVTGARVGVYSGS
APKKVDPNTWADLKAEHSRDFKANKTPILVSTSAFGMGIDKPNIRWVIHYGMPGSIEAYY
QEVGRAGRDGKTAQCVLVYSEFDEARDRALLSDDLTLEQARSRCDEIGSWAQRDDITSAL
YFHFNSFPGVDPEAETLSNVIRLLDPTKAKMEVDLPFNNAGRDEAGTRERAIHRLILLGV
IEDYTKSWGGKKFSITTQACTPLNVRDSLLQFVERSQPGRLDAIRAQLDTHEFEKLAPAI
DICGRILIEFVYDTIEKSRRRSLREMWLVVKEYTGDESIRRRVLDYLQEGDIVPVLETLA
EQAHFDWNAWAAAILEMQSVADAGEWRGASARLLASYPDHPGLLIARAWSELVDPEGDLQ
ESVSNILSACVSASLYGIAGDALVEIHDWLLKTSAVRSPHAFTGVLAALNSILTHKEIDE
YIALAGAEAAERADVAAILLNSKIKFELQNLEDIESLLFERYI
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagatcgagtgcccagtttgcggggcggagatggtgattaagaccgcgcgcaag
gggttcaatgcgggaggtcaattttatgggtgctctcaatggccccacactggctgtaat
ggcaaacggaacctagatccagcagatcaggtcgatgcccctgagggtggagtagcaaaa
aatcagggacgagtggccttcgagaggcgcatcgagtggctcgacggttccatgaacgca
gatgggtgggtatgtcgctacacgcatggtggcgcgtcattccgaagtattgattttcct
caagcggcattgaaccgagtatcaacctgctggatcgcaactgaagaccttgagtcttac
gagccgagtgatcctgaaacctcgcgagtggttgacctcttgatgaagattctccagaga
ggctcagctccgcctttggatccggagacggagaaggctctattgacgaaatttgggctc
ggcgagcgaattcgcgacttaggcgaagaggaccttgctattcgccttcagccaaagttt
gagatcgatgaggcgttaggtgaggcctcgtggggggagcaggttcacgaatttacgagt
tggccattcgattctaaagaggaacggcagttttacgatgatgtcctgccggctatcctc
ggctcagattggatgccatgggtcattcctcaagcctcgctagatcgtttgctacgtgct
aagggagttgagactgcaggcgatcgtagagttgattttcttgtttcggctccgtggatt
gcgccgtttgtcattgagttagatggcgctcagcatcaggatgccggtcatgttgatgat
gagcgagaccaatctcttgctgatgtaggcatccccgtgtttcgcgttgcgactcgcgag
ttaacaacccaaggggaagggctcgaagcgatacgtcaacactgtgatgtggatatcccg
catgctgagagtattcaaattgaccttcttcagacagcagctgagattcccagattggcg
atcggcttacttgaggcgattcgacgtggtttcctcgccggcgacagatgggtagttgag
gttcggtgtcgcaccgctctccccactgaactcgtagctccctacttgaatatcttggca
gccgcagctgctctatggggagatcggagcctcgctccggcgagaattgagtttgttgga
caagtgtcagtcgcgtatgaccttaatgatggggtgtacggagtttctagcgaagccgta
actaacgcggtagatgtggtgctccaccttgagggcgagaagactccagcaagtgctcta
ccgaagcgcgatgggtacatcccgcagatagtgattcgtagcaccttattgccgataaaa
gtccgagaccctcaggggcgggccggcaatcggatttcagtgcagacagaccgcgaggca
accaccagcgctctaaagactttgctccgtcatatatttgctaaagcagattttagagaa
ggtcagagcgagggcatcttagagattcttgggggaggcgactgcgttgttctcctccct
acaggcgcaggaaagagcatcatctatcaactggcgggcctatgcatgcctgggcgcacc
cttgtaattgatccactaatagctttaatagaagatcaggtccaaggccttcagcggcag
ggcatagacagaattgcgtgggttactggcgacgcagtagagcgtttcggagcagctgcg
gtgttggactctgtcgagaatgcagacgcgctatttatgctcgtctctcccgagaggctg
caggacgataaatttcgaagcgcattgcagagactaagcgctctggcattgataaacctt
gccgtcattgacgaggcgcactgtgtctctgagtgggggcatgatttccgcaccgcatac
ctaaatcttggttcaacaatcgcaaggacttgcgtgaaggacgcgcactctgggcgaccg
ccacttctcgctcttactgggacagcgtcgagagcggtgctgcgggacgtcctttttcaa
ctatcgatcacagaaaaattcggcaccgttgtgaggcctcgctcctttgaccggaaggaa
cttaaattccggattgattcatcaacgcccaagtcagctgaggccacattagagggagcg
ctggccgcactgcctgcagactttggagctacgcctgcgaacttctataagccaaggggc
gagaaaaccaactcaggtttgattttttgcagagtagtaaacggtaaaaaaggtgttata
gatgttgcggctctggcatctcgggtgactggggcgcgagtcggcgtttactcggggagc
gcgcctaagaaagttgacccgaatacttgggctgacctaaaggctgaacattctcgagat
tttaaggcaaataaaacgccgatcttggtctcgaccagcgcgttcggaatgggtatcgat
aaaccaaatattcgatgggtgatccattatggaatgcctggttcaattgaggcttattat
caagaagttgggcgtgccggtagagacggcaagactgcacaatgcgttttggtctactcc
gagtttgacgaggcccgtgacagggctctcctaagcgatgacctaactttggagcaagcg
cgaagtcgttgcgacgagatcggaagttgggcgcagcgagacgacataacctcagctttg
tattttcattttaactcctttcctggagtcgaccctgaggccgagactctgtcaaatgtc
atacgacttcttgatccaaccaaggcgaaaatggaggttgatcttccatttaataatgcc
ggtagggacgaggctggtacgcgtgaacgtgcgattcacaggcttattttactcggcgtg
atcgaggactacaccaagtcatggggtgggaagaagttcagtatcactacacaggcctgc
acccccttgaacgtgcgtgattcgcttcttcagtttgttgagagaagtcagcccggtcgt
cttgatgcaattcgtgcgcagcttgatacacacgagtttgagaaactggccccggctatt
gatatctgtggccgcatattaattgagtttgtttacgacacgattgagaagtcgcgccga
cgctccctacgcgagatgtggttggtcgtcaaggagtacacgggagatgagagcatccgc
aggcgtgtcctcgattaccttcaagagggcgacatcgtcccagtcctggaaacacttgcg
gagcaggctcacttcgactggaacgcgtgggctgcagcaatactcgaaatgcaatcagtc
gccgacgcaggcgagtggcggggtgcatcagcccgcctccttgcttcgtaccccgatcac
ccaggcctcttgatcgcacgggcatggtcagagctcgttgatcccgagggtgatcttcag
gagagtgtttcaaatatcttgagcgcctgtgtatcagcttcgctctatgggatagcaggc
gatgcgttagttgagatacatgactggttactcaagacctctgccgttcgcagtccgcat
gcttttacaggagtgcttgccgcgttgaactcaatactcactcacaaagaaatagatgag
tacattgctcttgctggcgcagaggcagccgagcgggcagacgtggctgcaatcttgctc
aattctaaaattaaattcgagcttcagaatctcgaggacattgaaagtctcctatttgaa
aggtatatctaa
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integrated database retrieval system
