Candidatus Nanopelagicus limnae: B1s21122_00340
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Entry
B1s21122_00340 CDS
T05073
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
abam
Candidatus Nanopelagicus limnae
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abam03032
]
B1s21122_00340
03400 DNA repair and recombination proteins [BR:
abam03400
]
B1s21122_00340
Enzymes [BR:
abam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B1s21122_00340
DNA replication proteins [BR:
abam03032
]
Prokaryotic type
DNA Topoisomerases
B1s21122_00340
DNA repair and recombination proteins [BR:
abam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B1s21122_00340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ASY08822
UniProt:
A0A249JWD5
LinkDB
All DBs
Position
complement(1195710..1198430)
Genome browser
AA seq
906 aa
AA seq
DB search
MGTKLVIVESPAKARKIGSFLGDEYVVEASVGHIRDLPQRAADIPKEYKKFAWAKEGVNI
EEEFAPLYVINPDKKSKVAELKELMKDADELILATDEDREGEAIAWHLIEVLRPKIPVRR
MVFHEITKDAIVKAAKETRDLDYRLVDAQETRRVLDRLYGYRLSPVLWKKVMPRISAGRV
QSVATRLIVERERERMAFISSSWWDLAAACEAGFSARLLSLNGKRVAATNDFDANGGIKD
KSAANILLLDQAGARELVQSLQGQSLVVKSLEESPRTERPKPPFTTSTMQQDAGSRLGWG
AQLTMRIAQRLYENGYITYMRTDSVTLSSSSITAARSSAQALYGKEFVPATPRVYEGKTK
NAQEAHEAIRPAGESFRTPGELAPELSRDEFALYDLIWKRTIASQMSDAKKQQMRVDFDV
KTKTGADAIFRANGSVITFAGFLAAYEDIVEDKADVEDTDRRLPAMSVGEKIKVNEYSCE
GHETKPPARYTEPTLVKKLEELGIGRPSTFASIMQTIQDRGYVAKRGRALVPTFLAFSVT
GLLEQHFTKLIDYEFTASMEEDLDRIANGDEERVAWLTKFFYGTEDNPGLADLSADLGAI
DAQAINTMKMGEDIEIRVGRFGAYLQQGQGDDRKFANIPEQMAPDELTLPVAIELLAKPS
GERKLGVDPGTGLEVIAKSGRFGAYITEVFPEEIVEEGAKKKRKKKDAPKPKTASLLSTM
SLDTVDLSDALRLLSLPRSLGSYQDEIITVQNGRYGPYMKHGADSRTLTSEDQLFSIGLE
EAIEIYKQPKVRRRGVAKPPLKELGKDPQTEREVIVKDGRFGVYVTDGETNATLRRGDAV
ELLTLERALELLAGRRAWEIENPGGSKKKGKRAKKSAPTLTEKTVKGAGAKKKAKKAATG
VGNAPK
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
ttgggaacaaagttagtaattgttgagtcccctgcaaaggcgcgcaagattggctccttt
ttaggggatgagtatgttgttgaagcatccgtgggccatattcgcgatttaccacaacgg
gcagctgatattccaaaggagtataaaaagtttgcctgggcaaaagagggcgtaaacatt
gaagaggagtttgcccctttatatgtaattaacccggataaaaaatctaaagtggccgag
ttaaaagagttaatgaaggatgctgatgaattaattctggcaacggatgaagaccgcgaa
ggtgaagcgatcgcatggcatctaattgaagtattacggccaaagattccagttcggcga
atggtttttcatgaaattaccaaggatgcgattgtaaaagcagctaaggaaactcgtgat
ttagattatcgattagtagatgcccaagaaacaaggcgcgtattagaccgcctttatgga
tatcgattatcaccagttttatggaaaaaagttatgccaagaatttcagcaggacgtgtt
caatcagttgcaactagattaattgttgagcgcgagcgtgaacgtatggcctttatttca
tctagttggtgggatttagcagcagcatgcgaggcaggattttcagcaaggcttttatca
ttaaatggtaagcgagttgctgctacaaatgattttgatgcaaacggtgggataaaagat
aaatctgctgcaaatattttattacttgatcaagcaggtgctagagaattagttcaatca
ttgcaaggtcaatcactggttgttaaatcattagaggaatcaccaagaactgagcgacca
aaaccaccctttacaacttcaaccatgcaacaagatgcaggttctcgtcttggctgggga
gcacagttaacaatgcgcattgctcaacgattatatgaaaacggctatatcacctacatg
agaacagattcagtaactctttcttcctcttccattacagcagcaagatcatctgcccaa
gcactttatggaaaagagtttgtgccagcaaccccaagagtttatgaaggcaaaacaaaa
aacgcccaagaagcgcatgaggcaattagaccagcaggtgaatcatttagaactcctggt
gaattagcgccagagttatcaagagatgagtttgcactctatgacttaatttggaagcga
actattgcatcccaaatgtctgatgcaaagaagcagcaaatgagagttgattttgatgtt
aagactaaaactggcgctgatgcaatatttcgtgcaaatggatcagtaattacatttgct
ggatttttagcagcctatgaagatattgttgaagataaggcagatgttgaagatactgat
cgcagattgccagcaatgagtgttggtgaaaagataaaggtaaatgaatacagctgtgag
gggcatgagacaaaaccaccagcaaggtataccgagccaacattagttaaaaaactagag
gagcttggaattggccggccatcaacctttgcttcaattatgcaaactattcaagatcga
gggtatgttgcaaaacgtggacgtgcattagttcctacttttttagcattttcagttaca
ggattattagagcagcacttcacaaagctaattgattatgaattcacagcctctatggag
gaggatttagatcgaattgcaaatggtgatgaagaacgagtcgcatggcttacaaagttt
ttctatggcacagaagataatccagggttagctgatttatccgctgatctaggcgcaatt
gatgcgcaagcaattaacaccatgaagatgggtgaagatattgaaatcagagttggcaga
tttggtgcttacctgcaacaaggccaaggtgatgatcgtaagtttgccaatatcccagag
cagatggcaccggatgaattaacacttcctgttgcaattgaattattagccaaaccatcg
ggtgagcgaaaattaggagtggatccgggaactgggctagaggttattgctaagtctgga
cgctttggtgcttatataactgaagtttttcctgaagagatagttgaagagggtgctaag
aaaaaacgtaagaaaaaagatgcgcctaaaccaaagacagcatcattactttcaacaatg
tcattagacacagttgatttatctgacgcacttcgtttgctgtctctaccaagatcttta
ggttcatatcaagatgaaatcattaccgttcaaaatggtaggtatggcccatatatgaaa
cacggtgcagattcacggactcttacaagtgaagatcaattgttttctattggactagaa
gaagcaattgaaatatataaacaaccaaaggtaagaaggcgtggtgttgcaaagccacca
cttaaagaattaggtaaagatccacaaacagagcgtgaagtaattgttaaagatggcaga
tttggtgtttatgtaacagatggtgaaacaaatgcaacattaagacgcggtgacgcggtt
gagttacttacattagaacgtgctcttgaattacttgcgggacgtcgggcttgggagatt
gaaaaccctggtggatcaaaaaagaaaggcaagagagcgaagaaaagtgcaccaacactt
actgagaaaactgtgaaaggtgcgggggcgaaaaagaaagccaaaaaggctgcaactggt
gttggaaatgcgccaaaatag
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