Candidatus Nanopelagicus limnes: B1s21122_00780
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Entry
B1s21122_00780 CDS
T05073
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
abam
Candidatus Nanopelagicus limnes
Pathway
abam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B1s21122_00780 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abam03021
]
B1s21122_00780 (rpoC)
03400 DNA repair and recombination proteins [BR:
abam03400
]
B1s21122_00780 (rpoC)
Enzymes [BR:
abam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B1s21122_00780 (rpoC)
Transcription machinery [BR:
abam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B1s21122_00780 (rpoC)
DNA repair and recombination proteins [BR:
abam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B1s21122_00780 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASY08901
UniProt:
A0A249JWK2
LinkDB
All DBs
Position
complement(1104173..1107997)
Genome browser
AA seq
1274 aa
AA seq
DB search
MLDVNFFDELRIGLASTDNIREWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDTEARAEDMPTLEKKYASDYKKVESRRDLELDARTKKMESD
LADLEDEGAKADARRKVREAGERELKTLRDRSQKELDRLEAVWNRFKNLKVQDLEGDESL
YRELRDRYGVYFKGSMGAQAIQSRLETFDLKAEFDKLNELSQTGKGQKKTRAIKRLKVVN
SFLNTRNKPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPITSPTQDMVLGLYFLTSLREKQLGEGR
AFSSIAEAVMAFDQGSLSLQAKIKLRIDKSGVGETRETTLGRALFNEVLPADFPFVDYDV
TKKLLGLIVDNLAEGYAKVTVAQTLDALKSLGFYWATRAGVTISINDVVTPGRKREILEG
YETKADKVQSQYEKGLITDDERRQELIEIWTLATNEVAKEMEDNFPRTNPVWMMVYSGAR
GNMMQIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTA
DSGYLTRRLCDVAQDVIIREEDCGTDRGLTLKIAAKDSTGTLVRDDHVETSLFGRNLAED
ISAGGKVILTAGTDLGDRNIDTLVAAGVEEVKVRSVLTCDSKVGQCAMCYGRSMAAGKIV
DVGEAVGIIAAQSIGEPGTQLTMRTFHTGGAQLLGETQITHGLPRVQELFEARTPKGVAP
IAEAAGTVSFLEDAKGKKIVVTPEDGGEAVAYPITRRQKLLVEEGQRVGVGQQLVVGAID
PKQVLRILGPRQTQIHLVSEIQEVYRMQGVSIHDKHIEIIVRQMLKRITVLEPGDADLLP
GELVERGRFEEENRRVVSTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAA
LSEKSDPLLGLKENVIIGKLIPAGTGLARYRNVRVEPTEEAKAAVYAAYDEFEFTPFESQ
GSGEAVRLDEFEVR
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgttaacttttttgatgagttaagaattggtcttgcctccactgacaatatt
cgtgagtggtcatttggtgaggttaaaaagccagagacaattaactaccgaaccctaaag
cctgaaaaagatggtttatttgatgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgagttcgatttaagggaatcatttgcgagcgatgcggcgtt
gaggtaactcgtgccaaggttcgtcgtgagcgcatgggacatattgaattagcagctccg
gttactcacatttggtatttcaagggtgtaccaagccgtcttggttacctactagatcta
gcaccaaaggatcttgaaaaagtaatttactttgctgcatacatgatcactgaggttgat
actgaggctcgcgctgaagatatgccaactttagagaagaagtacgcatcagattacaaa
aaggttgagtcacgccgggatcttgaattagatgccagaactaagaaaatggaatctgat
ttagcagatcttgaagatgaaggcgccaaggcagatgctcgccgtaaggtgcgcgaagct
ggtgagcgcgaactaaagacacttcgtgatcgttctcagaaagaactagatcgcctagaa
gcagtatggaatcgctttaagaatcttaaggttcaagatcttgaaggagatgaatcttta
tatcgtgaacttcgtgatcgttacggtgtttacttcaagggttcaatgggcgcgcaagca
attcaatctcgtcttgaaacttttgatctaaaagctgagtttgataaattaaatgagtta
tcacaaactggaaaaggtcaaaagaagacccgtgctattaagcgtttaaaggttgttaac
tcattcttaaatactagaaacaagccagcatcaatggtgcttgattgtgttccagttatt
ccaccagatcttcgtccaatggttcaactagatggtggccgatttgcaaccagtgatcta
aatgatttatatcgccgagtaattaaccgtaataatcgtctaaagcgcttagctgattta
ggtgcacctgagattattgttaataacgaaaagcgtatgttgcaagaagcggttgactca
ttatttgataatggtcgtcgtggtcgtccagtaacaggacctggaaatcgcccacttaaa
tcactttctgacatgctaaagggtaagcaaggacgattccgtcaaaacttacttggaaag
cgcgttgattactctggtcgttccgtgattgtggttggtccacaacttaagttgcaccag
tgtggtctgccaaagcagatggcacttgaattattcaaaccattcgtgatgaagcgtttg
gttgatttaaatcatgctcaaaatattaaatctgcaaagcgtatggttgaacgtgctcgt
ccagtagtttgggatgtattagaagaggtaattgctgagcatccagtactactaaaccgt
gcaccaactctgcaccgtcttggtattcaagcatttgaaccacaattagttgaaggaaaa
gctattcagattcacccattagtttgtactgcatttaacgcagactttgatggtgaccag
atggctgttcacttacctctatctgcagaagctcaagcagaggctcgcgtattaatgctt
tcaagcaataatattttatctccagcgtccggccgtccgattacatctcctacccaggac
atggtgcttggtctttacttcctaacctcactacgtgagaagcaattaggagagggcaga
gcattctcatcaattgctgaagcggttatggcatttgatcaaggcagcctttcattgcaa
gcaaaaattaagcttcgtattgataagagtggtgttggcgaaactcgtgagaccacatta
ggtcgtgctttatttaatgaggtactacctgctgatttcccatttgttgattacgatgta
actaagaagcttcttggtttaattgttgataatttggctgaaggttatgccaaggtaaca
gttgcacaaaccttagatgcacttaagtcacttggtttctactgggcaactagagctggt
gtaactatttcaattaatgatgttgtaacaccaggtcgcaagcgcgaaatcttggaaggt
tatgaaactaaagctgacaaagttcaatcacagtatgaaaagggattgattactgatgat
gagcgtcgccaagagttaattgagatttggacacttgctaccaatgaggttgcaaaagag
atggaagataacttccctcgcactaacccagtttggatgatggtttactcaggtgcacgt
ggaaatatgatgcagatccgccaaattgcaggtatgcgcggacttgtagctaacccaaag
ggtgaaattattcctcgtccgattaaatcaaacttccgtgaaggactttcagttctggag
tacttcatttcaactcacggtgctcgtaaaggtttggctgataccgcacttcgtaccgct
gactcaggttacctaactcgtcgtctttgcgatgttgcacaagatgtaattattcgcgag
gaagattgcggaactgatcgtggcctaacgctaaagattgcagcaaaggattcaactggc
acattagttcgtgatgaccatgttgaaacatctttgtttggtcgcaacttagctgaggat
atttcagctggtggaaaagttattttgaccgccggaactgatcttggtgatcgcaacatc
gacacattagttgcagcaggcgttgaagaggtaaaggttcgctcagttctaacttgcgat
agcaaggttggacagtgcgcaatgtgttacggacgatcaatggccgctggcaagattgtt
gatgtcggcgaagctgttggaatcattgcagctcaatcaattggtgagccaggaacgcag
ttaacaatgcgtaccttccacaccggtggtgctcagttacttggtgaaactcaaattacc
catggtctacctcgtgttcaagagttgtttgaggctagaactccaaagggtgttgcacca
attgctgaagcagctggcacagtttcattcttagaagatgccaagggcaagaagattgtg
gttaccccagaagatggtggtgaagcggttgcttacccaattactcgtcgtcaaaaactt
ctagttgaagagggacaacgcgttggagttggtcaacaattagttgttggcgcaattgat
cctaagcaagtacttcgtatcttgggaccacgtcaaactcagattcacttagtaagtgaa
atccaagaggtttatcgtatgcaaggtgtttctatccacgataagcacattgaaattatc
gttcgccaaatgttaaagcgcattactgtgcttgaaccaggcgatgctgatttattacca
ggtgagttagttgagcgcggtcgctttgaagaagagaaccgtcgcgtagtttcaactggt
ggcaaagcagcttctggtcgacctgagttaatgggtattaccaaggcctcacttgcaact
gaatcatggttatcagcggcttcattccaggagacaactcgtgttctaaccgatgcggct
ttgtctgagaagagtgatccactacttggtctaaaggaaaacgtaattatcggtaagttg
atcccagctggaactggacttgctcgttatcgcaacgttcgagttgagccaactgaggaa
gcaaaggctgcagtttatgccgcatacgatgaattcgagttcacaccatttgagtcacaa
ggatcaggtgaagcagttcgtttggatgagttcgaagttcgctaa
DBGET
integrated database retrieval system
