Candidatus Nanopelagicus limnes: B1s21122_04220
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Entry
B1s21122_04220 CDS
T05073
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
abam
Candidatus Nanopelagicus limnes
Pathway
abam03030
DNA replication
abam03430
Mismatch repair
abam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1s21122_04220 (holA)
03430 Mismatch repair
B1s21122_04220 (holA)
03440 Homologous recombination
B1s21122_04220 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abam03032
]
B1s21122_04220 (holA)
03400 DNA repair and recombination proteins [BR:
abam03400
]
B1s21122_04220 (holA)
Enzymes [BR:
abam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B1s21122_04220 (holA)
DNA replication proteins [BR:
abam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B1s21122_04220 (holA)
DNA repair and recombination proteins [BR:
abam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B1s21122_04220 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
ASY09536
UniProt:
A0A249JYE5
LinkDB
All DBs
Position
445677..446636
Genome browser
AA seq
319 aa
AA seq
DB search
MVANKVGLVLVQGAESLLADRAITQVIATNADAQVITLSSDEIEVGVITDNLAPSLFGDQ
RVVVIKEIQDLDLDCSDEIATYLENQDENLTLLLWHKGGVKGKALVDKIKKAGAQIITAE
AVKKESEKSEFVRAEFKRLNRKITTEAVQALIDSLGSDLRELSAACSQLASDVALQKTID
EEDVTAYQQGRVESTGFDVADAAVEGNTPIAIINLRNALATGTDPVLIVSALASSFRTLA
KVSGASRSVKSFELAQSMAIPPWQIDKARRQLVGWSENAMAKAVIAIAAADADIKGVAAD
PIYALERAIMTVCAARGSR
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaaataaggtggggttagttttagtacaaggggctgaaagcttgttagctgat
cgcgccatcacacaagttatcgccactaacgcagatgcccaggtaattacgctttcatca
gatgaaattgaggttggcgtcattaccgataacttggctccatcactttttggagatcaa
cgagttgttgttattaaagagattcaagatttagatttagattgcagtgatgagatcgct
acctacttagaaaatcaagatgagaatttaaccttacttctttggcataaggggggagtt
aaaggcaaggcactggtagataaaattaaaaaagctggggctcagataatcaccgctgaa
gccgtgaagaaagagagtgaaaaatcagaatttgttagggcagagttcaaacgtttaaat
cgaaaaataactaccgaggcagtgcaagcattaatcgattccctgggaagtgatttacgt
gagctcagtgctgcttgctcacaacttgcatccgatgtggccttacaaaaaactattgat
gaagaagatgtgactgcataccaacaaggcagagttgagagcacaggttttgatgtggct
gatgctgccgttgaaggcaatacgccaattgcgataattaatttaagaaatgctttagca
actggaactgatccagttttaattgtgagcgctcttgcttcatcttttcggaccttagct
aaggtttcaggagcttccagatctgttaaatcatttgaactagcccagagcatggcaatt
ccaccttggcagattgataaagcccgtcgccaacttgttggctggagtgaaaatgcaatg
gcaaaagctgtgatcgcaattgcagccgctgatgctgatatcaaaggcgtggcagccgat
ccgatctacgccctagaacgggcgataatgaccgtttgtgctgctagaggatctcgataa
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