Candidatus Nanopelagicus limnae: B1s21122_04320
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Entry
B1s21122_04320 CDS
T05073
Symbol
rimO
Name
(GenBank) endonuclease VIII
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
abam
Candidatus Nanopelagicus limnae
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
abam03009
]
B1s21122_04320 (rimO)
Enzymes [BR:
abam01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
B1s21122_04320 (rimO)
Ribosome biogenesis [BR:
abam03009
]
Prokaryotic type
ribosomal protein modification factors
B1s21122_04320 (rimO)
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
DUF3079
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
ASY09553
UniProt:
A0A249JYE2
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All DBs
Position
427920..429332
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AA seq
470 aa
AA seq
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MSSKILNEKKPRTVALVTLGCARNETDSEELAGRLAADGWQLVTNPADAEIAVINTCGFI
ESAKKDSIDALIQAHSLKANGVTKAVVAVGCMAERYGTELAQEMSETDAILSFDDYKDIS
ERLNTIIEGGKIKTHVPKDRRTLLPIAPVDRAASRDLAKGREVNPIGTVLRKRLDNAPIA
PLKIASGCDRRCSFCAIPYFRGSFISRKPAEIIEEAKWLADNGVTELYLVSENTTSFGKD
FGDLKMMEKMLPELSKIEAIKRIRLSYLQPAEVRPTLLQAMISVDKVVPYFDLSFQHANG
DLLRSMRRFGDGEKFLHLISQIRALSPTAGIRSNFIVGFPGESDAAFMDLIEFLSEAQLD
AIGVFGYSDEDKTEAETLPNKVAPELIAERVSELSTLVDELITQRSEMRIGEKISVLIED
EAEQEGRAEHQGPDVDGSTFVKSRNKYRVGDYVDAVVSDVAGVDLIAQVI
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcaaaaatccttaatgagaaaaaaccacgtacggttgcgttggttactttgggt
tgtgcccgaaatgaaacagactctgaggagttagctgggcgacttgcagctgatggttgg
caactagttaccaatcctgctgatgctgaaattgcggtaattaacacatgtggatttatt
gaaagcgctaagaaagattctattgacgctctgattcaagctcattcacttaaggcaaat
ggtgtaaccaaagcggtggtagcagttggttgcatggctgagcggtatggcaccgagctt
gctcaagaaatgagtgagactgatgcgatcttaagttttgatgattacaaagatatttca
gagcgcttaaataccattattgagggtggaaagattaaaacccatgtacccaaagatcgc
agaactctgcttccaatcgcaccggttgatcgtgctgccagtcgagatctagctaagggc
agagaggtaaatccaattggcacggtactgcgaaaacgacttgataatgcaccaattgcg
cctttaaaaattgcaagcggttgcgatcgaagatgttcattttgcgccatcccatacttt
cggggttccttcatctctcgcaaaccagctgaaattattgaggaagcaaagtggttggca
gataatggtgttaccgagctttacctagttagcgaaaacaccacctcatttggcaaagat
ttcggcgacttaaaaatgatggagaaaatgctgcctgagctttctaaaattgaagcaatt
aaacgaatcagactttcctatctgcaaccagctgaggtcaggccaacattgctacaagcc
atgatttcagtagataaagttgttccttactttgatctatctttccaacatgcaaatggt
gatctgcttagaagtatgcgcaggtttggcgatggtgagaaattcttgcatctaatctcc
caaatcagagcactttcaccaactgctggaattaggtcaaactttattgttggttttcct
ggggaaagtgatgctgcttttatggatctaatcgagtttttatctgaagcacaattagat
gcaattggagtatttgggtactcagatgaggataaaacagaagcagaaactcttccaaac
aaggttgcgccagagctaattgcagaaagagtttctgagctttcaactttagtagatgag
ttaattactcaacgctctgagatgagaatcggtgaaaaaatttctgtattaattgaggat
gaagcagaacaagagggaagagcagaacatcaaggcccagatgttgatggttcaaccttt
gtgaaatctcgaaacaagtaccgtgttggtgattatgtggatgcagtcgttagtgatgtc
gcaggtgttgacttgatagcgcaggtaatatga
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