Candidatus Nanopelagicus limnae: B1s21122_04335
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Entry
B1s21122_04335 CDS
T05073
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
abam
Candidatus Nanopelagicus limnae
Pathway
abam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1s21122_04335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abam03019
]
B1s21122_04335
Messenger RNA biogenesis [BR:
abam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1s21122_04335
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ASY09556
UniProt:
A0A249JYG6
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All DBs
Position
422889..424571
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AA seq
560 aa
AA seq
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MNHPHPGLPYPAKLAKKTLRIVALGGLGEIGRNMTVFEYEGRLLIVDCGVLFPGEDQPGI
DLILPDFSYLKDRMNDIEAIFLTHGHEDHIGAVPYLLRERSDIRIIGSQLTLAFVAPKLK
ERRITAPMTQVKAGQVEQVGPFTLEFVTVNHSIPDSLAVAIKTPAGVILHTGDFKMDKMP
LDGKVTDLETFARLGKEGVDLFLVDSTNADVPGLTVAEKDIYPALKEAIDKTPRRVVVTS
FASHVHRIQQVLNAANESNRKVAYVGRSMIRNMKLAEDLGYLKVPNGLVVDYKDIDTFGD
KIVLVCTGSQGEPLAALSRIANGDHEIQVGKGDTVVLASSLIPGNEKSVYRVINELTRFG
AHVVHKGNAMVHVSGHASAGELLHCYEVVKPKNVLPVHGEWRHMRANADLAMKSGLSEHN
VVIAENGITIDVADGHADISGSVPCGYVYVDGQSVGEITESSLKDRRILGDEGFISVVVV
IDSQSGKIVAGPDIHARGFTEDKTLFDDVKGDIEKALSKAVAGGFNGTHQLSQVVRKTIG
SWVGEEHRRKPMIIPLVVEV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatccccatcctggactgccttaccctgcgaagttagctaagaaaactcttcga
atagtagctcttggcggcttaggcgaaatcggccgcaacatgacagtttttgagtatgaa
ggaagattattaattgttgattgtggtgtgttatttccaggggaagatcaaccaggtatt
gatttaattttgcctgatttttcatatctgaaagatcgaatgaatgacattgaggcgata
tttcttacccacgggcatgaagatcatattggcgctgttccttatttacttagagagcgc
agtgatattcgaattattggatctcagttaacacttgcatttgttgctcctaagttaaaa
gagcgcagaataactgctccgatgactcaggttaaagctggacaagttgaacaagttgga
ccatttaccttggagtttgtaacagtaaatcactcaattcctgattcattggcggttgcg
attaaaacacctgccggagttatcttgcacactggagattttaaaatggacaaaatgcca
ctagatggcaaagtaacggatttagaaaccttcgccaggttaggaaaagaaggagtcgat
ttattcttagttgactcaacaaatgctgatgtgccaggactaactgtggcagaaaaagac
atctatccagcattaaaagaggcgattgataagacaccaagaagagttgttgttacctca
tttgcatcccatgttcacagaattcagcaggtattaaacgctgctaatgaatccaaccgt
aaggttgcatatgttggtaggtcgatgatccgaaatatgaagttggcagaggacttaggt
tatttaaaggtgccaaatggtttagtggttgattacaaagacattgatacattcggtgac
aaaatagtcttggtttgtactggctcacaaggtgagccacttgcagcactttctagaatt
gcaaatggagaccatgaaatccaagttggtaaaggtgacacagtagttttagcctcgtca
cttattcctggcaatgaaaaatctgtttatcgtgttataaatgaattaactagatttggc
gctcatgttgttcataaaggcaatgcaatggttcacgtatctggacatgcatcagctggg
gagctacttcactgttatgaagttgttaaacctaaaaacgttttaccagtccatggtgag
tggcgacatatgagagcaaatgctgatcttgccatgaagtctggtttgtctgagcacaac
gttgtaattgctgagaatggaattaccattgatgtggcagatggccatgctgacatatca
ggttcagtaccttgcggttatgtttatgttgatggacaaagtgttggcgagataactgaa
agctcactaaaggatcgtcgaattttaggtgatgaagggtttatctcagttgtagttgtt
atagattcccaaagcggaaagatagttgcaggtcctgatatacacgctcgtggatttact
gaggataaaactttatttgatgatgttaaaggcgatattgaaaaagcattaagtaaggca
gttgcaggtggatttaatggtacgcatcaactatctcaagtagtacgtaaaaccattggc
agctgggtgggggaggaacatcgtcgtaagccgatgatcattccgttagttgttgaggtt
taa
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