Candidatus Nanopelagicus limnae: B1s21122_05110
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Entry
B1s21122_05110 CDS
T05073
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
abam
Candidatus Nanopelagicus limnae
Pathway
abam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1s21122_05110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abam03021
]
B1s21122_05110
03019 Messenger RNA biogenesis [BR:
abam03019
]
B1s21122_05110
Transcription machinery [BR:
abam03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B1s21122_05110
Messenger RNA biogenesis [BR:
abam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B1s21122_05110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
SR-25
AAA_25
Spore_III_AA
HeH
AAA_22
HNF-1_N
Motif
Other DBs
NCBI-ProteinID:
ASY09700
UniProt:
A0A249JYV7
LinkDB
All DBs
Position
261632..263263
Genome browser
AA seq
543 aa
AA seq
DB search
MAEKKSTNRADAVELVDMALGDLKKVAGQLGIENASTLKKAELVQSIGDLQAANREAAKN
EREARRMERQNNRNNKNNNSEAEDNESSQDSSPNNSNSNSSGGYGDSDRSDNNRRFGNRD
NNRRDRGRDRNRDRGNRERGNREEREIVVGPDDVLLPVGGLLDILDSFAFIRTGGYLPSP
NDVYVSLQQVRKYGLRKGDVITGSVREPKEGERREKFNALVRVETVNSVEPENAKERVEF
SKLVPLYPQERLRLETEPNVLTTRIIDLISPIGKGQRGLIVSPPKAGKTMVLQAIANAIT
TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPADDHTTVAELAIERAKRLVEL
GHDVVVLLDSITRLGRAYNIAAPASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTIL
ATALIDTGSKMDEVIFEEFKGTGNMELILNRKFADKRIFPAVDVVASGTRKEEILMGTEE
LSIVWRLRRVLHALEPQQALELLLEKMKGTKSNVEFLLQIQKTTTGGDMPTGNGSNKQES
DQA
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaaaatcaaccaatcgcgcagacgcggttgagttagtggatatggcacta
ggtgatcttaaaaaggttgctggtcaacttggaattgaaaatgcctccacacttaagaaa
gcagagttagtccaatctattggagacctgcaggccgcgaatcgcgaagccgctaaaaat
gaacgagaggctcgtcgtatggaacgacagaacaatcgaaataataaaaataacaattct
gaggcagaggataacgaatctagccaagatagctcacctaataattcaaacagcaactcc
tcaggtggatatggcgattctgaccgaagcgataacaatcgtaggtttggtaaccgagac
aacaatcgacgagatcgcggtcgtgaccgtaatcgagatcgtggaaatcgtgagcgcggg
aaccgtgaagagcgtgaaattgtcgttggaccagatgatgtattacttccagtcggcggc
ctactagatattttagatagctttgcatttattagaactggtggatatttgccatcacct
aatgatgtttatgtttcactacaacaggtaagaaagtatggcctgcgtaaaggtgatgtg
attactggatctgtgcgtgaacctaaagagggtgaacgccgtgaaaaatttaacgcactc
gtcagagtagagactgtaaatagtgttgagcctgagaatgcaaaagagcgagttgaattt
tcaaagttagttccactttatccgcaggaaagattgcggcttgagactgaaccaaacgtt
ctaaccaccagaattattgatttaatctcaccaattggtaaaggccaacgtggtttgatt
gtttcacctcctaaggctggtaaaacaatggttctgcaagcaatcgcaaatgccatcaca
actaataatccagagtgtcatttaatggttgtcttagttgatgagcgtcctgaagaggta
actgatatgcagcgatcagtaaagggtgaggtaattgcctcaacatttgatcgcccagca
gatgatcacaccacagttgctgagcttgcaattgaacgtgccaaaagattagttgagcta
ggacatgatgttgtggtgttactagattcaattactcgacttggacgtgcgtataacatc
gcagctcctgcctctggtcgaattctctccggtggagttgattcagctgcgctttatcca
ccaaagaaattcttcggtgctgctagaaatattgaaaatggtggctcactaactattttg
gcaacagctttgattgatactggatcaaagatggatgaagttattttcgaagagttcaaa
ggaactggaaatatggaacttatcctcaaccgtaagtttgctgacaagcgaattttccct
gcagttgatgtggttgcatctggaactcgtaaggaagaaattcttatgggaactgaagag
ttaagcattgtttggcgtttgcgccgagtgctacacgcacttgagccacagcaagcactt
gagttactcctggagaagatgaaaggaaccaaatcaaatgttgagttccttcttcaaatc
caaaagaccactaccggtggagatatgccaactggaaatggatctaacaagcaggagagt
gatcaggcttaa
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