Candidatus Nanopelagicus limnae: B1s21122_05345
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Entry
B1s21122_05345 CDS
T05073
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
abam
Candidatus Nanopelagicus limnae
Pathway
abam03420
Nucleotide excision repair
abam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1s21122_05345
03430 Mismatch repair
B1s21122_05345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abam03400
]
B1s21122_05345
Enzymes [BR:
abam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1s21122_05345
DNA repair and recombination proteins [BR:
abam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1s21122_05345
MMR (mismatch excision repair)
Other MMR factors
B1s21122_05345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ASY09742
UniProt:
A0A249JZ10
LinkDB
All DBs
Position
213280..214923
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AA seq
547 aa
AA seq
DB search
MAVDNSAILAELDSDQLAVVKAITGPVCVIAGAGTGKTRVITNRIAYAINAGVTDPTKVL
ALTFTAKAAGEMRARLRALGISNASARTFHSAALKQLLYFWPYAFGGQFPSLLTTKSGFI
SQAITRAEVAIPAQVNALREIASEIEWAKVLEISPENYQQEAIANNRLVRLPNSKGESEN
LSMIAQVYEAYESLKKQERTLDFEDVLLLTVGMLEEDRGVRERVQDQYRYFTVDEYQDVS
PLQQRLLNLWLGSRQEICVVGDAAQTIYSFAGATSNFLLNFQNRFPNAQVFRLSRGYRST
PEIINTANAILRAANLVSDHGSELQSANAHGEKPAVNGFNSTQDEISYVVGEVVKSISLG
VDSSQIAVLARTNAQLDQVKSALNNARIPSQIRSGERFFDRTDVRDVMRIIRSASVLPSE
GGDWYADLVAVLRPFGDADYVVAFLRLAKSIQENGGKNMRAFLREIEDRSEQNNPPTLPG
VTLATLHAAKGLEWNHLFLIGVSEGVLPMGNDLNEERRLFYVGITRAKERIQITYAGKPS
VFLAQFN
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagataattctgcaattttggcagagcttgattcagatcaactagcagttgta
aaagcaataactggtcctgtatgcgtgatagcaggtgctggtactggtaaaactcgagta
atcactaatcgaattgcatatgcaattaatgcaggagttaccgatccaacaaaagtatta
gctcttacctttactgctaaagcagctggtgagatgcgggcaagattgcgcgcccttggt
atttcaaatgccagcgctagaacattccactcagcggcgctaaagcagcttctctatttt
tggccatacgcctttggtgggcaatttccatcgctgctaactactaaatctggctttatt
agccaggcaattactagagctgaggttgcaattccggcccaggtaaatgcacttcgagaa
attgcaagtgaaattgaatgggcaaaagttttagagatttcacctgaaaattatcaacaa
gaagcaattgccaataaccggctagttagattgccaaatagcaaaggcgagtctgaaaat
ctctcaatgattgcccaagtttatgaagcttatgaatcattaaagaaacaggagcgcacc
ctagattttgaagatgtactactcctgactgttggcatgttggaggaggatcgtggggtg
cgagagagggtgcaggatcagtatcgatacttcaccgtggatgagtaccaggatgtttca
cctttgcagcagcggttgttaaatctttggctaggaagtcgtcaagaaatttgtgttgtg
ggggatgcggctcaaactatttactcatttgctggggccacctcaaacttcttacttaac
tttcaaaatagatttccaaatgcccaagttttccgactctcccgcggttatcgatctacc
cctgaaattatcaataccgcaaatgcaatcttgcgagccgctaatttagtttcagatcat
ggcagtgagttgcaatcagcgaatgcccatggtgaaaagcctgcggttaatggatttaac
tccacacaagatgagatctcttatgtggttggtgaggtagtgaagagtatttctcttggc
gtggactcatcgcaaatcgcagtattggccagaaccaatgcccagttagatcaggttaag
tcagctttgaataatgccaggattccaagtcagattagatcaggtgagagattttttgat
cgaaccgatgtgcgagatgtaatgcgcattattcgaagtgcctccgtactaccttctgaa
ggtggtgattggtatgccgatttagttgcagttcttcgaccatttggtgatgctgattat
gttgtggcttttttaaggttggctaaaagtattcaagaaaacggtggcaaaaatatgcgc
gcctttttgcgtgagatcgaggatcgatctgagcaaaacaatccaccaaccttgcctggg
gtaacactggcaactttgcatgcagccaaaggtttggaatggaatcacctgtttttaatt
ggggtttctgagggcgtactaccaatgggtaatgatttaaatgaagaacgacgactattt
tatgttggcattacccgtgcaaaggagcggattcaaatcacctatgccggcaagcccagc
gtatttctagcccaatttaattaa
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