Candidatus Nanopelagicus limnae: B1s21122_05360
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Entry
B1s21122_05360 CDS
T05073
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
abam
Candidatus Nanopelagicus limnae
Pathway
abam03420
Nucleotide excision repair
abam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1s21122_05360
03430 Mismatch repair
B1s21122_05360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abam03400
]
B1s21122_05360
Enzymes [BR:
abam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1s21122_05360
DNA repair and recombination proteins [BR:
abam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1s21122_05360
MMR (mismatch excision repair)
Other MMR factors
B1s21122_05360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ASY09745
UniProt:
A0A249JYZ6
LinkDB
All DBs
Position
208238..211498
Genome browser
AA seq
1086 aa
AA seq
DB search
MSIKYSALDIAKKITAVDPSFRVPTQEQIPIIESPLAPAVVIAGAGSGKTETMSQRVLFL
VANSIITPNQLLGLTFTRKAAGELSKRIKYRLRQLKKAGLLPDHLDESELTVSTYHSYAG
KVLADHAIRIGIDADADPIGEAAAWQIAFEEVTRFSGNDLPINGSTASVVQEVMDLSTQL
AENDRSADEIIDYTEKLLSNLSQFSDRQTVPVIEFKEELQQRLAILPIVDAFDRRRKENG
LLTFNDHMSIAARLVSESKLNHSDDIGLIERSKYKVVLLDEYQDTSFNQIKFLSNLYGNN
HPVTAVGDPNQAIYGWRSASSETLDTFSQSFSSKALRFNLLTTWRNDHAILDLANVVIDQ
ISTEKQVAKLAARPNAKTGEVICAIYDTQVQEGQEIASYFAKHWFDKERERLPADKKTTF
AVLVRSRSQIDLIQSAFGELNIPTDVVGVGGLINTPEVADIIALLRTLTMPESGTALMRL
LTGPHLNLGARDLMALGSFTKSFARANDYSRGAQLKQALEENIEVTTTADEFAAGSIIES
LEQLLILTPAELKKYQKTPEFTDEGLARLRKFALSLRTLRRNLNGSITESISEVSEFLSL
DTEVLVRDGWQNGRRNIDRFLDEAARFQKNGGSLFNFLQWLKIAQDAEGGLKPAEVDVRS
DAVQILTIHAAKGAEWDYVAIPGLAEKNFPNIGKKSDNWITNAGSIPVSMRGDYQQLPSI
SFENFSTNKNLKDGIESFGDQWKSRKAMEEMRLAYVAITRAKQGLICTTSHFRTGENAVA
PSRLFQLFANAAINIAGASVIADSEIPDGINPMKENPITASWPKTNPAIFKLQEVAKLVD
SSQPYTKVEVEQLVAKSTDDEKLSLLTDLQMIINEIKSKSSKQDVILPTRLSVSTLLYLA
NDPQELALRLRRPMPNHIDKYARRGTEFHLWLENHFKHPALISMDELFNQNSSAGSDQDA
PLDKLQEAWLSSDWAKKAPIDVEVGFETMIDTTLIRGRIDAVYKVDADHYEVVDWKTGKV
KSGDDLQSASIQLAMYRLAYAKLKNVPIENISAAFHYVIDNQTVRPADILDEQGLIDLVS
KVPLQV
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcaaatactcagcgttagatatcgcaaagaaaattactgcagtagatccttca
tttagagtaccaacgcaagagcaaattccaattattgagtccccccttgcaccagctgta
gttattgcaggcgctggttctggcaaaactgaaactatgagccagcgagttttattctta
gtagcaaactcaatcattaccccaaaccaattactgggtttaactttcacaagaaaagca
gctggtgagctatctaagcgaattaaatatcgccttcgccaactaaaaaaggctggtctt
ttgccagatcacttagatgagtcggagttaactgtttctacctatcactcatacgccggc
aaagtattagccgatcatgcaattcgaattggcatagatgcagatgctgatccaattggt
gaggcagcagcttggcagattgcatttgaagaggtcactagattttctggaaatgattta
ccaatcaatggctcaactgcatcagttgtgcaagaggttatggatttatccacccaattg
gcagaaaatgatcgaagcgcggatgaaattattgattacaccgagaaattgctttccaat
ctctcacaatttagtgaccgccaaactgttccagtaattgagttcaaagaggagttacag
cagcggttggcaattctgccgattgtcgatgcctttgatcgccgacggaaagaaaatggc
ctgttaacttttaatgatcacatgtctattgctgccagattggtcagtgaaagtaagtta
aaccatagtgatgatattggcttgattgagcgcagcaaatataaagttgttttacttgat
gagtatcaagatacatcttttaatcaaataaagtttctatcaaatctttatggaaataat
catccagtaacagctgttggcgaccctaaccaggctatctacggctggcgcagcgcaagc
tctgaaactttggatactttctcacaatcctttagtagtaaagcattgcgatttaatctg
ctaacaacttggcgaaatgatcatgcgatattggatctggcaaatgttgtaattgatcag
atttcaactgaaaaacaagttgcaaagttagccgctagaccaaatgcgaaaactggtgag
gttatttgcgccatttatgatacgcaagttcaagaaggtcaggagattgcttcttacttt
gccaagcactggtttgataaagaacgagagagattaccggctgataagaagacaaccttt
gcagtgttggttagaagcaggtcacaaattgacctaattcaatcggcctttggtgagtta
aatatcccaaccgatgttgttggagttggcggcttgattaacactcctgaggtagcagac
attattgctcttcttcgcacactgactatgcctgaatctggaactgcattaatgcgatta
cttactggacctcatctaaatcttggtgctagagatttaatggcacttggcagctttact
aaatcatttgccagagcgaatgattactcacgtggtgctcaattaaagcaagcacttgag
gagaacatagaggtcacaactactgccgatgagtttgctgctggttcaatcattgagtca
ttagagcaattactgattttaacgcccgctgaattaaagaaatatcaaaaaacgccagag
tttactgatgaaggtttagcaagattaagaaaatttgcactctcgctgcgcacccttagg
cgtaatttaaatggctcaatcactgagtcaatttcagaggtatctgagtttttatcactt
gatactgaagtattagtaagagatggctggcaaaatggccgcaggaatattgatcgcttc
ttagatgaagcagctagatttcaaaaaaatggcggcagcttgttcaactttttgcagtgg
ctaaaaattgctcaagatgcagagggtggattaaagccagcagaggttgatgttagaagt
gatgcggttcagatattaaccattcacgcggcaaagggtgctgaatgggattatgttgca
attcctggtttggctgagaagaattttccaaatattggcaaaaagtcagacaactggatc
actaatgcgggcagcattccagtcagcatgcgtggtgattatcaacaactgccatcaatt
agttttgagaatttttcaacaaataaaaatttaaaagatggaatagaaagttttggtgac
cagtggaaatctcgcaaagccatggaggagatgcgtctggcatatgtggcaatcactcgg
gcaaagcaaggcttaatttgcacaacttcacattttagaactggtgaaaatgcagtcgcg
ccaagcaggctatttcaattatttgctaatgccgcaatcaatattgctggtgcaagtgtt
atcgcagattcagagattcctgacggaataaacccaatgaaggaaaatccaattaccgcc
tcttggcccaagacaaatccggccatttttaagctacaagaggtagctaaattagttgat
tcatctcagccatataccaaagtagaagttgaacaacttgttgcaaaatcaactgatgat
gagaagttaagtttgcttacagatttacaaatgataatcaatgagattaaatcaaaaagt
agtaagcaagatgtaattttaccaaccagattgtcagtttcaaccttgctttatcttgct
aatgatccacaagagcttgcccttagattaagaagaccaatgccaaatcacattgataaa
tatgcaagaagaggaacagagtttcacctatggcttgaaaatcattttaagcatccggca
ttgatctcaatggatgagttgtttaatcaaaattcatctgccggctctgatcaagatgca
ccactagataagttgcaagaggcttggctttcaagtgattgggcaaagaaagcacctatt
gatgttgaagttggttttgaaaccatgattgataccaccttgattagagggagaattgat
gcagtttataaggtggatgctgatcattatgaggtcgtggattggaaaactggcaaggtt
aaatccggtgatgatcttcaatcagcctcgatacaacttgcgatgtatcgacttgcctat
gcaaaactaaagaatgttccaattgaaaatatctcagctgcttttcactacgttatagat
aatcaaactgttagaccagctgatattttagatgagcaggggttaatagatttagtaagt
aaggtcccgcttcaggtctga
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