Amycolatopsis bartoniae: AMYBAR_001505
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Entry
AMYBAR_001505 CDS
T10755
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
abar Amycolatopsis bartoniae
Brite
KEGG Orthology (KO) [BR:
abar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
abar03016
]
AMYBAR_001505
Enzymes [BR:
abar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AMYBAR_001505
Transfer RNA biogenesis [BR:
abar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AMYBAR_001505
Prokaryotic type
tRNA splicing ligases
AMYBAR_001505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XMG32645
LinkDB
All DBs
Position
complement(1546985..1548175)
Genome browser
AA seq
396 aa
AA seq
DB search
MHAALEGARVPIRIWADPASVEEAAMRQLRNVANLPWVHGLAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTASDLPDDLGRLRRRIESAVPVGFSMHKTPVDPAR
VPGSGGWDRFWSAFGALHPGVQNLRDRARAQVGSLGGGNHFIEVCLEQGGADEGRVWLML
HSGSRGIGNELAKRHIDVARSLPHNADLPDRDLAVFVAGTPEMAAYRRDLFWAQDYAARN
RATMVALVQRALADEVPGVRFDEPISCHHNYVAEETYDGVDVLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNESSFLSASHGAGRRMSRTKARKTFTAADLAAQTSGVECRKDDGV
VDEIPAAYKDIDSVIAAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccgcactggagggggcgcgggtaccgatccggatatgggccgacccggcgtcg
gtcgaggaggccgcgatgcgccagctgcgcaacgtggcgaacctgccgtgggtgcacggt
ctcgcggtgatgccggacgtgcactacggcaagggcgcgacggtcggcagcgtcatcgcg
atgcgcgacgcggtgtcgccggcagcggtcggcgtggacatcgggtgcgggatgagcgcg
gtccgcacgtcactgacggcgagcgacctgcccgacgacctcggcaggctgcggcggcgc
atcgaatccgccgtgccggtcgggttttcgatgcacaagacaccggtggacccggcacgc
gtgcccggttccggtggctgggaccggttctggtcggcgttcggtgcgctgcacccgggt
gtgcagaacctgcgggaccgcgcgcgggcgcaggtcggcagcctcggcgggggcaaccac
ttcatcgaggtgtgcctggaacagggcggcgccgacgagggacgcgtgtggctgatgttg
cactcgggttcgcgggggatcgggaacgaactggcgaagcggcacatcgacgtcgcgcgt
tcgctgccgcacaacgccgatctgccggaccgtgacctggcggtgttcgtcgcgggcacg
ccggagatggccgcgtaccggcgggacctgttctgggcgcaggactacgcggcccgcaac
cgggccacgatggtcgcgctcgtgcagcgcgcgctggcggacgaggtgccgggcgtacgg
ttcgacgagccgatttcgtgccaccacaactacgtcgcggaggagacctacgacggcgtg
gacgtgctggtgacgcggaagggcgcgatccgggcggggtcgggagatctgggcatcatc
ccgggcagcatgggcaccggctcgtacatcgtgcggggactggggaacgagtcgtcgttc
ctgtcggcgtcccacggcgccggccggcggatgtcgaggacgaaggcacgcaagaccttc
acggcggcggacctggccgctcagacgagcggcgtggaatgccgcaaggacgacggtgtg
gtggacgaaatccccgcggcgtacaaggacatcgactcggtgatcgcggcgcagacggat
ctggtggaggtggtggcgcacctgaagcaggtggtgtgcgtgaagggctga
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