Amycolatopsis bartoniae: AMYBAR_004494
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Entry
AMYBAR_004494 CDS
T10755
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
abar Amycolatopsis bartoniae
Pathway
abar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMYBAR_004494 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abar03400
]
AMYBAR_004494 (ligD)
Enzymes [BR:
abar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMYBAR_004494 (ligD)
DNA repair and recombination proteins [BR:
abar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMYBAR_004494 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
XMG35572
LinkDB
All DBs
Position
4752033..4753958
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AA seq
641 aa
AA seq
DB search
MLAKPDGGRLRTGPGWAYEYKLDGYRCCLRVAADGTTVLTSRNGIDFTAEFPSLASVFGN
ALGRAAVLDGEIVACTEDGRVDFGLLQERRGRYQKHHGDAPFDGTPVRFLAFDLLRFGRV
NLLDQPYDRRRELLERLPMPDENLVTVVPAYTFDQLDGDGLTPQDLLHRASAEGYEGLIA
KLRSAGYSPGRRPDSWLKHPLIRTQEVLVCGWKPGQHGFTGTLGSLLLGAHDPATGELVY
LGDVGTGFSRQDRADLQDLLEKRARRTHPFAVAPPREDVARARWAEPDLVGEVQYRQFTR
GAGRLRHTSWRGLRADREPEEVLAPTAMPNPEPAPRRPPGKKITVQAGKRRLTLSNLDKP
LFPDGFTKGEVINYYSHIAPLLLPHLAGRPVTFIRYPDGVGGQQFFEKNAPQGKPDWLKT
ALLPSTGSRGSGEDIAYPLIDELPALVWAANIAALELHVPQWTVAPGPKRRPPDRLVFDL
DPGEGTTIVECCRVAERLREVLAADGLTPFAKTSGSKGMQVYAGIRTRSADAPSKYAKAL
AERFAAETPDLVTAKMAKALRPGKVFIDWSQNNPAKTTVAPYSLRGRDRPTVSTPITWDE
VRRCRKAGQLVFTADEVLERAEDVGDLFAEIDETRAPLPKR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgctcgccaagcccgacggcgggcggctgcgcacggggccgggctgggcgtacgagtac
aagctcgacggctaccgctgctgccttcgcgtcgccgccgacgggacgaccgtgctcacc
agccgcaacggcatcgacttcaccgccgagttcccgtcgctggccagcgtgttcggcaac
gcgctgggccgtgccgccgtgctcgacggggagatcgtcgcgtgcaccgaggacgggcgg
gtcgacttcgggctgctgcaggaacggcgtggccgctaccagaagcaccacggggacgcg
cccttcgacggcacgccggtccggttcctcgccttcgacctgctgcggttcggccgcgtg
aacctgctcgaccagccctacgaccggcgccgcgagctgctggagcggctgccgatgccc
gacgaaaacctggtgaccgtcgtgcccgcgtacacgttcgaccagctcgacggcgacggg
ctcacgccgcaggacctgctgcaccgcgcgtccgccgaggggtacgagggcctgatcgcg
aagctgcgcagcgcgggctactcccccggccgccgcccggactcgtggctcaagcacccg
ctgatcaggacgcaggaggtgctggtctgcggctggaaacccggccagcacgggttcacc
ggcacgctcggcagcctgctgctcggcgcacacgaccccgcgaccggcgagctggtgtac
ctcggcgacgtcggcaccgggttcagccgccaggaccgcgcggacctgcaggacctgctg
gagaagcgggcgcggcggacgcacccgttcgccgtcgcgccgccccgtgaggacgtcgcc
cgcgcgcggtgggccgagccggatctcgtcggcgaggtccagtaccgtcagttcacccgc
ggcgccggccggctgcggcacacgtcgtggcggggcctgcgcgccgaccgcgaacccgag
gaggtgctggcccccaccgccatgccgaaccccgaacccgccccgcggcgcccgccgggc
aagaagatcactgtgcaggccgggaaacgcaggctcacactgtccaatctggacaagccg
ctgttcccggacggcttcaccaagggcgaggtgatcaactactactcgcacatcgcgccg
ctgttgctgccccacctggccgggcggccggtgacgttcatccgctaccccgacggcgtc
ggcgggcagcagttcttcgagaagaacgcgccgcagggcaagccggactggctgaagacg
gcgctgctgcccagcaccggttcacgcggttcgggcgaggacatcgcgtacccgctgatc
gacgagctgcccgcgctcgtgtgggccgcgaacatcgccgcgctggagctgcacgttcca
cagtggacggtcgcaccgggaccgaagcgccgcccgccggaccggctggtgttcgacctc
gaccccggcgagggcaccacgatcgtcgaatgctgccgggtcgcggagcggctgcgcgag
gtgctggccgccgacgggctcaccccgttcgcgaagacgtccggttccaaggggatgcag
gtctacgccgggatccgcacgcgcagcgcggacgcgccgtcgaagtacgcgaaggcgctg
gcggagcggttcgcggcggagacgccggacctggtgacggcgaagatggcgaaggcgctg
cggccgggcaaggtgttcatcgactggagccagaacaacccggcgaagaccacggtggcg
ccgtactcgctgcgcggccgcgaccgcccgaccgtttcgacgcccatcacgtgggacgag
gtccggcgctgccgcaaggccggacagctggtcttcaccgcggacgaggtcctcgaacgc
gccgaggacgtgggcgacctgttcgcggagatcgacgaaacccgggcgccgctgccgaag
cggtga
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