Amycolatopsis bartoniae: AMYBAR_006208
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Entry
AMYBAR_006208 CDS
T10755
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
abar Amycolatopsis bartoniae
Pathway
abar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMYBAR_006208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abar03019
]
AMYBAR_006208
03400 DNA repair and recombination proteins [BR:
abar03400
]
AMYBAR_006208
Enzymes [BR:
abar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMYBAR_006208
Messenger RNA biogenesis [BR:
abar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMYBAR_006208
DNA repair and recombination proteins [BR:
abar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMYBAR_006208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_20
DUF3553
Cas3-like_C_2
PcrA_UvrD_tudor
DUF7342
AAA_30
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
XMG37248
LinkDB
All DBs
Position
6570054..6571664
Genome browser
AA seq
536 aa
AA seq
DB search
MSARDELQAAAKKNFGWDQLLPDQRKAMEQLLDGRDVLVVMPTGSGKSAIYQVPALLRPG
PTLVVSPLTALQRDQVTQIAESDAPEAVAVNSAQPNRESKDAWESIREGDAEYLFLSPEQ
LAKEEVLRRLDEIRPSLFVVDEAHCVSAWGHDFRPDYLRLSPVIERLGHPPVLALTATAG
GPVREDIVTHLGMHDPVQVITGFDRPNLYLAAQWFATDEEKQQAILDWVAEEPKPGLVYT
ATRKDAERYAEAIGPSAAAYHAGMKAGDRKEVHERFLADEVEVVVATSAFGMGIDKPNVR
FVAHASIPESLDSYYQQIGRAGRDGEPARAMLFYRPEDLGLQRFLTARRLDEEGVREVAD
AVRDHDGPMTPHDVDDEVDQSHRRAMNNLNLLEQADVVEVRDGEFDYRDDAPEDPAEEVA
EVAEKQKQLDRTRLEVMRQYAETQSCRRQFLLGYFGETLEEPCGHCDTCDAGTAAEQAQF
ADAEFPPDSKVRHREWGPGRVVHREADRLTVLFDDGGYRTLSLKAVEEEDLLTQEG
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgcacgcgacgagctgcaagcagcagcgaagaagaacttcggctgggaccagctg
ctccccgaccagcgcaaggcgatggagcagctgctcgacggccgtgacgtgctcgtcgtg
atgcccacgggctccggcaagtccgcgatctaccaggtgcccgcgctgctgcgcccgggg
ccgacgctggtggtgtcgccgctgaccgcgttgcaacgcgaccaggtcacgcagatcgcc
gagagcgacgcaccggaggcggtggcggtgaattccgcccagccgaaccgcgaaagcaag
gacgcctgggagtcgatcagagaaggcgacgccgagtacctgttcctctcccccgaacag
ctggcgaaggaagaggtgctgcggcggctcgacgagatccggccgagcctgttcgtcgtc
gacgaggcgcactgcgtttccgcgtggggacacgacttccgacccgactacctgcggctg
agcccggtgatcgagcgcctcgggcacccgccggtgctcgcgctgaccgccaccgccggc
ggcccggtgcgcgaggacatcgtgacgcacctgggcatgcacgacccggtgcaggtgatc
accggcttcgaccggccgaacctctacctggccgcccagtggttcgccaccgacgaggag
aagcagcaggccatcctggactgggtcgcggaggagccgaagcccggcctcgtctacacc
gccacccgtaaggacgccgagcgctacgccgaagccatcggcccgtccgccgccgcctac
cacgcgggcatgaaggccggtgaccgcaaggaagtgcacgaacggttcctcgccgacgaa
gtcgaggtggtggtcgccacgtcggcgttcggcatgggcatcgacaagccgaacgtccgc
ttcgtcgcgcacgcctcgatcccggagtcgctcgactcgtactaccagcagatcggccgc
gccgggcgtgacggcgaacccgcgcgggcgatgctgttctatcgccccgaagaccttggc
ttgcaacggtttctgaccgcccgccggctggacgaggagggcgtgcgcgaggtcgccgac
gcggtgcgcgaccacgacgggccgatgacgccgcacgacgtcgacgacgaggtggaccag
tcccaccggcgcgcgatgaacaacctgaacctgctggaacaggccgacgtcgtcgaggta
cgcgacggcgagttcgactaccgcgacgacgcgcccgaggacccggcggaagaggtcgcc
gaggtcgcggagaagcagaagcaactggaccggacgcggctggaggtcatgcgccagtac
gcggaaacccagtcgtgccgccgccagttcctgctcggctacttcggagagacgctcgaa
gaaccgtgcgggcactgcgacacgtgtgacgcgggcacggccgccgaacaggcgcagttc
gccgacgcggagttcccgccggactcgaaggtccgccaccgtgagtgggggccggggcgc
gtcgttcaccgggaagcggaccgcctgacggtgttgttcgacgacggcggttaccgcacg
ctgtcactcaaggccgtcgaggaggaggacctgctgacgcaggaaggttga
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