Amycolatopsis bartoniae: AMYBAR_006395
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Entry
AMYBAR_006395 CDS
T10755
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
abar Amycolatopsis bartoniae
Pathway
abar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
abar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMYBAR_006395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
abar03000
]
AMYBAR_006395
03400 DNA repair and recombination proteins [BR:
abar03400
]
AMYBAR_006395
Enzymes [BR:
abar01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AMYBAR_006395
Transcription factors [BR:
abar03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AMYBAR_006395
DNA repair and recombination proteins [BR:
abar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AMYBAR_006395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HHH
DUF2249
Motif
Other DBs
NCBI-ProteinID:
XMG37432
LinkDB
All DBs
Position
6778023..6779492
Genome browser
AA seq
489 aa
AA seq
DB search
MTAVATPAGQALWRDAERCYRAVASRDARFDGQFIVAVKTTGIYCRPSCPALTPKAANVR
FYPTSAAAQAGGFRACRRCLPDAVPGSPEWNLRADLAARAMRLIADGVVEREGVPGLAGR
LGYSERQLGRVLTAELGAGPLALARAHRAHSARLLIELSELPLSDVAFAAGFASVRQFND
TIREVFARTPSQLRAAAAARGRPDTVPTDEPTGTKLSLRLPYRKPFDAGGIFGFLAARAV
PGVEWAEDGGYGRTLRLPHGPATIQLTPQDGHVRCELRLADVRDLGSAVARTRRLLDLDA
DPEAVLRVLGADPALAPAVDAAPGIRVPGAVDGPELLLRAMLGQQVSVAAARTAAGRLAE
ALGEQLPWGTLFPTPEAVAEHGRDVLRGPRRRVEAISTAAEALATGALDLHVGRDPDELR
KELLALPGVGPWTADYVLMRVLGAPDLLLADDLVVRKGAAALGITDLTDHAQAWRPWRSY
AGMYLWRSA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacagccgtagccacccccgccgggcaggcgctctggcgtgacgccgagcgttgctac
cgcgccgtcgcgtcccgcgacgcccgcttcgacgggcagttcatcgtggccgtcaagacc
accggcatctactgccgcccgtcctgcccggcgctgacgccgaaggccgcgaacgtgcgg
ttctacccgacgtccgccgccgcccaggcgggtggcttccgcgcctgccgccgttgcctg
ccggacgccgtgcccggctcacccgagtggaacctgcgcgccgacctcgccgctcgcgcc
atgcgcctgatcgccgacggcgtcgtcgaacgcgagggcgtgcccggcctggccgggcgc
ctcggctactcggaacgccagctcggccgcgtgctcaccgccgagctgggcgccggcccg
ctggccctcgcccgcgcgcaccgcgcccactcggcccgcctgctgatcgagctgtccgag
ctgcccctgtccgacgtcgccttcgccgccgggttcgcgagcgtccgccagttcaacgac
accatccgcgaagttttcgcgcgcacgccatcgcaactccgtgccgcggccgcggcgcga
gggcggccggacaccgtgcccaccgacgaaccgaccggcacgaagctcagcctccggctg
ccctaccgcaagccgttcgacgccggcggcatcttcggcttcctcgccgcccgcgccgtg
cccggcgtcgagtgggccgaggacggcggctacggacgcacgctgcggctgccgcacggt
ccggcgaccatccagctcaccccgcaggacggccacgtccgctgcgagctgcggctcgcg
gacgtgcgcgacctcggcagcgcggtcgcccgcacccgccgcctcctcgacctcgacgcc
gaccccgaggccgtgctgcgcgtcctcggcgcggaccccgcgctcgcccccgccgtcgac
gcggccccgggcatcagggtgcccggcgccgtcgacggacccgaactcctgctgcgcgcc
atgctcgggcagcaggtgtccgtggccgcggccaggacggcagcgggccgcctcgccgaa
gccctcggcgagcagctcccgtggggcacgctgttcccgacgcccgaagccgtcgccgaa
cacggacgcgacgtcctccgcggcccccgccgccgggtcgaggcgatcagcaccgccgcc
gaggcactggcgaccggcgcgctcgacctccacgtcgggcgcgacccggacgagctgcgg
aaggagctcctcgccctgcccggcgtggggccctggaccgccgactacgtgctcatgcgc
gtcctcggcgcgcccgacctgctcctcgccgacgacctggtggtccgcaagggcgccgcg
gcactcggcatcaccgacctcaccgatcacgcacaggcctggcgaccctggcggtcgtac
gccggcatgtacctctggcgaagcgcctga
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