Acidisarcina polymorpha: ACPOL_3570
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Entry
ACPOL_3570 CDS
T05576
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
abas
Acidisarcina polymorpha
Pathway
abas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPOL_3570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abas03019
]
ACPOL_3570
03016 Transfer RNA biogenesis [BR:
abas03016
]
ACPOL_3570
Enzymes [BR:
abas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACPOL_3570
Messenger RNA biogenesis [BR:
abas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACPOL_3570
Transfer RNA biogenesis [BR:
abas03016
]
Prokaryotic type
tRNA degradation factors
ACPOL_3570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
OB_HELZ2
OB_RNR_1st
S1CSD-TOTE-2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AXC12855
UniProt:
A0A2Z5G2G6
LinkDB
All DBs
Position
complement(3787797..3790430)
Genome browser
AA seq
877 aa
AA seq
DB search
MTDRDLLRRIERSPGQRAGYKQLVRELSLPGGRERRLLVEHLARLTAAGKLVKLDRDHWA
MAKSVATRDNLAAGRLDLHRDGYGFVRPDARQASGQEDIFIPPNEINSAMQGDQVLVELL
PNRADGRKLGRIVRVLTRRNPTVVGIFHYSRNQRFPENTVTPFDDRMTQPIVIPDGMEIS
ATLPKSNANRVLGDEAVAAAGAIDFNDTSPTPLEGLVVDIEITDFPGPNRAARGRVIEIL
GDPDAFGVDVEMMIRKHHLPHVFPEQVLAEAREVAHLDPETVAERRDFRDLPIVTIDGET
AKDFDDAVLVEENADGTYQLQVHIADVAEYVLTGTDLDLEARLRGNSVYFPDRAVPMLPQ
ELSTNICSLRPGEDRLVLSCLMRIDVHGEVLDYEICEGVIRSARRMTYTQVAAIIDPGRD
DHGSTRTRFNDLVPAFERMYALALLLNKKRQRRGSIDFDLPEPVIEFDASGAMLNVVRSV
RNWANRLIEEFMLAANECVASWIEQLGVPSIYRIHEMPEAKRVIEVEDTAAHFGYSLGIG
ALPVKRVQMKSDRREQQRGSRGRDHRGGHQGHRTPQQHEIAQEIPVTPQMYQRLTAKIVG
KPEERILAYLMLRSLKQARYSEKNEGHFALAAPSYTHFTSPIRRYPDLVVHRIVKALLAE
GVNPQGALAPGEPHAPGKHAAFRPKPRAAAPSDPALIPIPESELAAIAQETSQTERRAAE
AERELIEWKKIKFMRDRVGEDFDALILNATKYGLFVELDNLFVEGLVPIDSLRDDHYTYR
ENTREIIGSRNHRKYFMGQRVRVILERIDAIQKRLQFALIEEETAGKRPAKAGQAKGGQA
KKAKAAKPKEAKSSGRPAYKPPKAKKLKPKRKKGRRG
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccgtgacttgctccgccgcattgaacgctcccctggccagcgcgctggttac
aagcagttggtgcgcgaactctcgcttcctggaggacgagagcggcgactgctggtcgag
cacctcgcacggctgaccgcagcaggcaaattggtcaaactggaccgcgaccattgggcg
atggcgaagtcagtcgcgacgcgcgacaatcttgcggccggccgccttgacctgcatcgc
gacggctatggatttgtccggcccgatgctcgacaagcctcgggccaggaagacattttc
attccgccgaatgagatcaactctgccatgcaaggcgatcaggtgctggtcgagctgttg
ccgaaccgggcggatggccggaagctgggccgcatcgtgcgcgtgctcacccgccgcaac
ccgaccgtggtcggcatctttcattactcgcgcaaccagcggtttccggagaacacggtc
acgcccttcgatgatcgcatgacccagccgatcgtgattcccgacggcatggagatctcc
gccacgctgccgaagtcgaatgccaatcgtgtcctgggtgacgaagctgttgccgccgct
ggagcgatcgattttaatgacacctctccaacgccgctcgagggcctggtggtggacatt
gagatcaccgacttcccaggccctaatcgtgcggcccgtgggcgggtgatcgaaatcctt
ggcgatccggatgcctttggcgtcgatgtcgagatgatgatccggaaacatcatttgccg
catgtctttcccgagcaggtgttggcggaggcccgcgaggtggcgcatctcgatccggaa
acggtcgccgagcgacgcgattttcgcgatctgcccattgtcaccattgacggagagacc
gcgaaagacttcgacgatgcggttctggtcgaggagaatgcggacggcacgtatcagctt
caggtacatattgcggacgtcgccgaatacgtactcaccggcaccgacctggatcttgaa
gcccggctgcgcggcaactccgtttactttcccgaccgcgcagtcccgatgcttccgcaa
gaactctcgaccaacatctgcagcctgcgcccgggcgaagatcgcctcgtgctctcttgc
ctgatgcggatcgatgttcatggcgaggtcctcgactatgagatctgcgaaggtgtgatc
cgttcggcacggcggatgacctatacccaggttgcggcgattatcgatccgggacgagac
gatcatggatccacccgcacccggttcaacgatctggttccggccttcgaacgtatgtat
gcgctggctttgctgcttaacaagaagcgtcagcggcgcggctcgatcgatttcgatctt
cccgagccggtgattgaattcgacgcatccggggcaatgctcaatgtggtccgctcagtc
cgcaactgggccaaccggttgattgaagagttcatgctggccgcgaatgagtgcgtcgct
tcttggatcgagcagcttggcgtgccctcgatttaccggattcacgagatgcccgaggcg
aagcgggtcattgaagtcgaagatactgccgcgcatttcggctactccctgggcattggc
gcactgccggtgaagcgcgtgcaaatgaagtccgaccgccgcgagcagcagcgcggaagc
cgaggcagggaccatcgcggcggccatcaaggtcacaggacgccgcagcagcatgagatt
gcgcaggagatcccggtaactccgcagatgtatcagcggctgaccgcgaagattgtcggc
aagccggaagaacgcatcctcgcctacctcatgctgcgttcgctcaagcaggcccgctat
agcgagaagaacgaaggccatttcgccttggctgctccgagctatacgcatttcacttcc
ccgattcgccgctatcccgacctggtcgttcaccgcatcgttaaggcattgctggccgag
ggggtcaatcctcaaggagcgctcgctcccggcgaaccgcatgctccgggcaaacatgcg
gccttccgtccgaagcctagggcggctgctccctctgatccggcgttgattcccattccc
gaatctgaactggcggccatcgcccaggagacgagccagacggagagacgggccgcggaa
gccgaacgcgaactgatcgagtggaagaagatcaagttcatgcgcgaccgggtcggcgaa
gacttcgacgcgctgatcctcaacgcgacgaaatacgggctcttcgtcgagctcgacaat
ctctttgtggaggggctggtgccgatcgacagcctccgcgatgaccactacacctatcgc
gaaaacacgcgcgagatcattggcagccgcaatcatcgcaagtacttcatggggcagagg
gtgcgggtgattctagagcggatcgatgcgatccagaaacggctgcagtttgcgctgatc
gaggaggagacggcggggaagcgtccggcgaaggcggggcaagctaagggaggtcaagcg
aagaaggcgaaggcagctaagccgaaggaggctaaatcctccggaaggccagcctacaag
ccgcccaaggccaagaagcttaagcctaagcggaagaagggcaggaggggttga
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