Acidisarcina polymorpha: ACPOL_5254
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Entry
ACPOL_5254 CDS
T05576
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abas
Acidisarcina polymorpha
Pathway
abas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPOL_5254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abas03019
]
ACPOL_5254
Enzymes [BR:
abas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACPOL_5254
Messenger RNA biogenesis [BR:
abas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACPOL_5254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
Cas3-like_C_2
Utp25_C
ScsC_N
Motif
Other DBs
NCBI-ProteinID:
AXC14508
UniProt:
A0A2Z5G5Y5
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All DBs
Position
5597890..5599047
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AA seq
385 aa
AA seq
DB search
MTQFNDFQISAPLKKRLASCNFTIPTPVQEGAIPPALEGRDVLATAQTGTGKTLSFLIPV
IEKLQATQSRSASALILLPTRELAMQVEQTFRTLTQGSSLTVALVVGGLAEGPQIQAIRR
GARLIVATPGRLEDYIKRRMVKLNEVQILVLDEVDRMLDMGFKPAIKRIAGELPADRQTL
CYSATLDAAIKEVVRDYLKNPVRVEIGSILKPAENVRLQTFEVTSDKKQELLEHLLKSEE
GSFLVFVRTKHGAERVAQRLTRSGHGATSIHGDRTQAQRSAALKSFAKGGHRILVATDVA
ARGLDVDHIAHVVNYDMPKVAEDFVHRVGRTGRASKKGVASTFAQPDERGDLKKIERVLK
ISMERFRVKPNMGIGSATYPTSAHA
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
ttgactcaatttaatgattttcaaatttctgctccgctgaagaagcgtctggccagctgt
aacttcaccatccccactccagtccaggagggcgccattcctccagccctcgaaggtcgc
gacgtcctggcgactgcgcaaaccggtaccggtaagactctaagcttcctcattccggtc
atcgagaagctgcaagcgacgcagagccggagcgcttcggcgctgatcctgctgcccacc
cgcgagctggcaatgcaggtcgagcaaacctttcgcaccctgactcagggcagttcgctt
accgtcgcgcttgtggttggcggtctcgcggaaggaccccagattcaagcgatccgtcgc
ggagcgcggctgatcgtggcgactcccggccggctcgaggattacatcaagcgtcgcatg
gtcaagctcaacgaagtacagattctggtgctcgacgaggtcgaccgcatgctggacatg
ggcttcaaaccggcgatcaagcggattgctggggaactgcctgccgaccggcagacgctc
tgctactccgcgactctcgatgcggcgattaaagaagtcgttcgcgactacctgaagaat
cccgttcgggtggagatcggttcgattctgaagccggccgagaatgtccgtctccagact
tttgaagtgacctcggacaaaaagcaggaactactcgagcatctcttgaagagcgaggaa
ggcagcttcctggtctttgttcgcaccaagcatggcgccgaacgcgtcgcccagcggttg
acccgctcgggacacggtgcaaccagcattcatggcgatcgcactcaggcccaacggagc
gcggcactgaagagcttcgctaagggcggccaccggattctggtggcgaccgatgtcgcg
gcccgcggcttggatgtcgaccacattgcgcatgtcgtgaactacgacatgccgaaggta
gccgaggacttcgtccatcgcgtcggaagaaccggacgcgcctcgaagaagggcgtagct
tcgaccttcgcgcagccggacgaacgcggcgatctgaagaagattgagcgcgtcctcaag
atttcgatggagcgttttcgagtgaagccgaatatgggcattggatcggccacttacccg
acttccgcgcacgcataa
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