Candidatus Brevifilum fermentans: CFX1CAM_0629
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Entry
CFX1CAM_0629 CDS
T04881
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abat
Candidatus Brevifilum fermentans
Pathway
abat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFX1CAM_0629 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abat03400
]
CFX1CAM_0629 (mfd)
Enzymes [BR:
abat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFX1CAM_0629 (mfd)
DNA repair and recombination proteins [BR:
abat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFX1CAM_0629 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
AAA_16
UPF0158
Motif
Other DBs
NCBI-ProteinID:
SMX53694
UniProt:
A0A1Y6K229
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All DBs
Position
I:complement(697097..700519)
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AA seq
1140 aa
AA seq
DB search
MQLLDAIGELTAYRELLSDLQGAPGRSQTLPGLGLPRAARLPLLARLQHDLACPILLITN
RADRALALYEELGFWLGEAGVHYFPEPNPLFYEKSGWGAGTRRDRLQVLTLLARLLIPGM
PQPGHPPVIVAPVRAIMTRTLPRRDFIKHTRALRIGQQVTPDGLTREWVETGYDYANIVV
EAGQFSRRGGILDVWSPGEDEPARIEFFGDEIDTMRTFDPATQRTLAKLEALTVTPAREI
LPRAAEKAGLPLKDLSEFLLPLAHPMGGCLLDFLPDNALIALDGQEFIAAAVTEIEEESL
SRRDDAIRAGEIDADFPLPFFTWSEIEDRVGKRPLVELGYTGALDEPALAANFLSGPRFA
GKLRDFMDHLKALQREGQPWVVVSRQSARLRNLWRDGLLAQDARAEQQLESQFIEGNLAG
GWSLTTRDGGMLHLLTDSEIFGWARPQPRRRYRPTAEAPESSYADLEPGDWVVHVDYGIG
KFAGLVQRTHEGTLQEYLCIEFADQDHLFVPIHHADRLTRYIGADGHVPVISRLGGSTWS
ATKQKVREAVQEIAGELLDLYAQRQVAEGFSFSQDTPWQRELEASFPYIETEDQLQALAE
IKADMENPRPMDRLLCGDVGYGKTEVTLRAAFKAVMDGKQVAVLVPTTVLAQQHYDTFRE
RLATFPVEVEMLSRFRTQREQNRIIKDLSTNKVDIVIGTHRLLSGDVSFKNLGLVVIDEE
QRFGVAHKEHLKKLRTSVDVLTLTATPIPRTLYMALTGVRDISTINSPPEERLPIVTHIG
PYDSKLVRYAIVRELERGGQVFFVHNRVQTINAMKARLERLVPEASIAIAHGQMDENELA
ATMHRFTDGEVDVLLCTSIIEAGLDIPNANTLIVDRADTLGLAQLYQLRGRVGRGAQRAY
AYLFRHRLRAPTPEGQERLEVLAENTQLGSGYAIAMRDLEMRGAGELLGTRQSGYIASVG
FHLYTRLLAQAVNQYRLATGAKGPGDASVLDASLTIPTSVNLPLSIGIPDTYIPDQALRL
KLYRRLADIHDEAALASIEMEFVDRFGPPPERVSNLLFQIKIKVLAAKAGLAAVSFEGRQ
ILLRYPPLPSGIENRNLPELGYPVSSGKNAYRIHFHDPENEPWQELLVQTLVRIARADGR
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgcaattactcgacgcaatcggtgaattaacggcttaccgtgaactgctatccgacctg
cagggggcgcccggacgcagtcagaccttgccggggctgggattgccgcgtgccgcgcgc
ctgccgttgctggcgcgcctgcagcacgacctggcgtgcccgattttgttgatcaccaat
cgcgccgatcgtgccctggctctgtatgaagagttagggttctggctgggtgaagcgggc
gtgcactacttcccggaacccaaccccttattttatgaaaaatcaggctggggcgccggc
acacgtcgggaccgtttgcaggtgttgaccttgctggccaggctgttaatccccggaatg
ccacagcctgggcacccgccggtgatcgttgccccggtgcgggcgatcatgacccgcacg
ctcccccgccgcgatttcatcaaacacactcgcgcactgcggatcggtcagcaggtcact
cccgatggactgacccgtgagtgggtggaaaccggctacgactacgccaatatcgtggtt
gaggcgggtcagttttcgcgccgcggcggaatcctcgatgtgtggtctcccggcgaggac
gaaccggcgcggattgagttttttggcgatgaaattgacacaatgcgcaccttcgatccg
gccacgcagcgcacgctggcaaaacttgaagccctgacggtcacgccggcgcgggaaatt
ttgcccagggcagcggaaaaagccggcttgccgttgaaggacctttcggaatttttattg
cccctggcgcatcccatgggaggttgtttgctggacttcctgcccgataacgcgttgatc
gccctggatggacaggaattcattgccgcagctgtgactgaaatcgaagaggaaagcctc
tcgcgacgggacgatgccatccgggcgggcgagatcgatgctgatttcccgctccctttt
ttcacctggtctgaaattgaagaccgggttggcaaacgcccgctggtcgagctggggtat
accggtgcgctggatgagcccgctttggcagcgaattttttatccgggccgcgatttgcc
ggcaaactgcgggattttatggatcatctgaaggcgcttcagcgcgagggtcagccctgg
gtggtcgtctcgcggcagtcggcgcgtttgcggaatttgtggcgcgatggattgcttgct
caggacgcccgggcagaacaacagcttgaaagccaattcattgaaggcaacctggcggga
ggctggtcactcaccacccgtgatggaggaatgctgcatctcttaacggacagcgaaatc
ttcggctgggcgcgcccgcaaccccggcggcgttatcgcccgaccgccgaggctcccgaa
tccagctacgccgacctggaacctggcgattgggtggtgcatgtggattatggcatcggc
aagttcgccggactggtccagcgtacacacgagggaacattgcaggagtatctgtgcatc
gaatttgccgaccaggatcatctgtttgtgcccatccaccatgcagatcgcctgacacgc
tatatcggtgctgacgggcacgttcccgtgatctctcgcctggggggcagcacctggagc
gccaccaagcagaaggtgcgcgaagccgtgcaggaaatcgccggtgagctgttggatcta
tatgcccagcgccaggtggcggaagggttttccttcagccaggacactccctggcagcgc
gaactggaagccagctttccctacattgaaaccgaagatcagcttcaagccctggctgaa
atcaaagcagatatggaaaacccccgcccgatggaccgcctgttgtgcggggatgtgggt
tacggaaaaaccgaggtcaccctgagggctgctttcaaagctgtgatggacggcaagcag
gtggcggtgttggtgcccacgaccgtgctggcacaacaacactacgacacctttcgggaa
cgactggcaaccttcccggtggaggtggaaatgctctcgcgctttcgcacccagcgggag
cagaatcgcatcatcaaggacctgagcaccaataaagtggacattgtcatcggtacacac
cgcttgctttcgggggatgtttccttcaaaaatttgggcctggtggtgatcgatgaagaa
cagcgctttggcgtggcgcataaggaacacctcaaaaaactgcgcacctctgtggatgta
ctcaccctgacggcgacgcccattccgcgcaccctttatatggcgctgaccggagtacgt
gatatttccaccatcaactcgccgcctgaagaacgcctgccgatcgtcacccatatcggc
ccttatgattccaagctggtacgttatgcaatcgtgcgcgagctggagcgcggcgggcag
gtgttctttgtgcataaccgcgttcagacaatcaacgcgatgaaagctcgcctggagagg
ctggtaccagaagcaagcatcgcgattgcacacgggcagatggatgagaacgaattggca
gcaacgatgcacaggttcaccgatggcgaggtggacgttctgctgtgcacgtcgatcatt
gaagccggtttggatatccccaacgccaacacgctgatcgttgaccgggcggacacctta
ggcttggcgcagctttaccagttacgcggacgggtgggtcggggggcgcaacgggcttat
gcgtacttgttccgtcatcgcttgagggcgcccacacccgaaggtcaggagcggttagag
gtgttggcagagaacacccagttaggatcaggatacgccatcgccatgcgcgacctcgaa
atgcgtggtgcgggcgagctattgggcacgcgtcaatccggttatatcgcttcggttgga
ttccatctttacacgcggcttttggcgcaggcggtgaaccaatatcgcctggcaaccggt
gcgaagggtccgggcgacgcaagcgtgctggatgcctcactgaccatccccacctcggtc
aacctgccgctatcgatcggcatccccgacacttacattcccgaccaggctttgcgcctg
aaactgtaccggcgcctggcggatatccacgatgaagccgccctggcatcgatcgagatg
gaatttgttgatcgctttggtcccccgcctgagcgggtgagcaacctgctgttccagatt
aagatcaaggtgctggctgccaaagccgggctggcagcggtcagttttgaggggcgtcag
atcctgttgcgctacccgccgcttcccagcgggattgagaaccgaaatttacccgaactg
ggctacccggtgtcctcgggaaagaacgcctatcgcattcattttcatgatccggaaaac
gaaccctggcaggagcttttagtgcaaacgttggtgagaattgcccgtgcggacggtcgt
taa
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integrated database retrieval system
