Candidatus Brevifilum fermentans: CFX1CAM_1249
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Entry
CFX1CAM_1249 CDS
T04881
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
abat
Candidatus Brevifilum fermentans
Pathway
abat02020
Two-component system
abat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
abat00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CFX1CAM_1249 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFX1CAM_1249 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abat03021
]
CFX1CAM_1249 (rpoN)
Transcription machinery [BR:
abat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFX1CAM_1249 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
HTH_11
HTH_38
HTH_Crp_2
CENP-B_N
Sigma70_r4
HTH_20
Rad50_zn_hook
DUF4148
Motif
Other DBs
NCBI-ProteinID:
SMX54314
UniProt:
A0A1Y6K3X2
LinkDB
All DBs
Position
I:complement(1393697..1395130)
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AA seq
477 aa
AA seq
DB search
MQLRSTHSQYQTQSPMTSAHIAQTMTLLYMTSTELLQTIDRELSQNPALELINERRCPMC
GRRLPPEGPCSICSQPKTMDPDETIVFVSPRDDFYTFSASASTSIEDYPEDPFSSANLDL
SSYVLRQVAPVLELDEREIAAMILTNLDEDGFLNINIVEICRYHHVPPSKVEKVLSKIQH
CDPIGVASRNVKEALLVQLDHLAETGTVPEFAKQVISEDFKLLSRHHYSELAKKYRTTLY
EMQSLASFISDNLNPFPARANWGTFRNPSDNKPDVFNQPDVLIYYLNNKPGNPLVIEIIM
PSRGFLRINPLFKQAIKEQTGENQEEWKKDIGKASLLIKCIQQRNNTMQQLMSRLVAIQK
PFIMQGETFLEPLTRAQIAAELDVHESTISRAVANKTVQLPNKRIIPMAMFFDRSLAVRT
VLKEIIANEPHPLNDTELQEQLENQGISVARRTVAKYRAMEGILPAHLRRNEKFATL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgcaactgaggtctacacacagccaatatcaaacacaaagcccgatgacatcggcgcat
atcgcccaaaccatgacattgttgtacatgacatcgactgaattactccaaaccattgat
cgtgaactttcacaaaatccggctttagagcttatcaacgagcgccgctgtccaatgtgt
ggtcgaagattgccacctgaaggtccttgttcaatctgcagccagccaaaaaccatggat
cctgacgagaccattgtgtttgtctctccaagagatgatttttacaccttcagcgctagt
gcctctacctcaattgaggattaccccgaagatccgttttcatcagcaaatctagatctg
tccagttacgtcttacgccaggtggcgccagtgttagaacttgatgagcgggaaatcgca
gcgatgatcctgaccaacctggatgaggatggattcctcaacatcaacatcgttgagatc
tgccgctatcatcatgtgccgccctccaaagtagaaaaagtattatctaaaatccaacat
tgcgatcccattggagtcgcttcccgtaatgtgaaagaagctctgctcgtgcaacttgat
caccttgctgaaacaggcactgtgcccgaatttgccaaacaggtaattagcgaagatttt
aaattgctgtcccgacaccattattcagagctggcaaagaaatacagaaccacattgtat
gagatgcaaagtcttgcaagttttatcagtgataaccttaacccattcccagcaagagcc
aattggggaacattccgcaatccgagcgataataaacctgatgtttttaatcaaccagat
gtcctaatctattatcttaataacaaacccggtaatccattggttattgaaatcatcatg
ccatcacgtggttttttgaggattaaccccttgtttaaacaggcgattaaagaacaaacc
ggagaaaaccaggaggagtggaaaaaagacatcggcaaagcgtcgctcttgatcaagtgc
attcaacaacgcaacaataccatgcaacaactgatgtcccgattggttgcaattcaaaaa
ccatttataatgcaaggtgagacgtttttagaaccccttaccagagcccaaattgcggca
gaattggatgtacacgaatcaaccatttcgcgtgcagttgccaataagacagtgcagttg
ccaaataaaagaataattccaatggcgatgttctttgatcgcagcctggctgtcaggaca
gttcttaaggagatcatcgctaacgaaccacatccacttaacgataccgaactccaggaa
caattggaaaaccagggcatctcagtggctcggcggaccgtggcgaaatatcgtgccatg
gaaggcatactcccagcccatctgagacgaaatgaaaaattcgctacactatga
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