Candidatus Brevifilum fermentans: CFX1CAM_1677
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Entry
CFX1CAM_1677 CDS
T04881
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
abat
Candidatus Brevifilum fermentans
Pathway
abat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
abat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFX1CAM_1677 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abat03021
]
CFX1CAM_1677 (rpoC)
03400 DNA repair and recombination proteins [BR:
abat03400
]
CFX1CAM_1677 (rpoC)
Enzymes [BR:
abat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFX1CAM_1677 (rpoC)
Transcription machinery [BR:
abat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFX1CAM_1677 (rpoC)
DNA repair and recombination proteins [BR:
abat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFX1CAM_1677 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RPOC_hybrid
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
SMX54742
UniProt:
A0A1Y6K4V6
LinkDB
All DBs
Position
I:complement(1885391..1889749)
Genome browser
AA seq
1452 aa
AA seq
DB search
METKGLKTLRIGLASPEEIRKWSYGEVLKPETINYRKLRPEKDGLFCEAIFGPTRDFHCY
CGKYKNSRKKGITCDICNVEITRSSVRRERMGHIDLAAPVAHIWYTRRIPSYLGLILNIS
RRNLDRVLYFAQYIVTYVNEDARQKALKRLDDEISLSERDLEDKINAQIVEEKKARDRAL
KENDAERVRLQESYDEQIGNRIEPVIKEGQRLESEIQTRIGKKIRKAIVFNVLDKEELIV
DVGEEVMPAHLSQVQKIVKDMIEVLEADLKEQRDLELEHLSMQREEIRAASELKMEELRN
MLVDQAEESQSESARSRDELHELEPFKFLSEARYRELKSRWGQVFRADMGAEAFYDILKR
IDLDALAEELWEEINTTRSKQKRKKATRRLSVIEAFRRSNNKPEWIIMTVLPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDVIVRNEKRMLQEAVDSLIDNSQ
RGKALSRRGRRELRSLSDMLKGKKGRFRRNLLGKRVDFSGRSVIVVGPYLKLHQCGLPKS
MALELYRPFVYSQLMKQEYAGNIKSAKRLIERGRPEVWEILEEVIKNRPVLLNRAPTLHR
LGIQAFEPILIEGNAIQLHPLVTTAFNADFDGDQMAVHVPLSDKAVTEARELMLATKNLL
KPANGEPIISPSKDMVLGVYYLTMEVDEKQAGDPRAFSSIDEVLMAYSMGLVHVHEKIKL
LTETWYDQDNTRMENPATRIIETTVGRTIFNNALTERMRFYNHELDKNGVRDLVAEVYDI
CGQEETCIIADQIKDIGFQYATRSGITIAIADINVPASKAEILQAAQEKVDEIDQSLERG
ITTEDERNKIVGDIWEETGHQVTVEVEKALDPMGDLTTMAKSGASKGGINAISQLAGMKG
LVSDPSGRVITMPIRSNYREGMTPFEYYISTHGARKGLADTALRTADAGYLTRRLVDVAQ
DVIVNEEDCGTYQGIWINADDNIAGQSFEKRLYGRVLADRVINPETGEIVFNRNDLLTHD
RVKIIKELGISAVHVRSPLTCEMIHGICANCYGMDLARGEMVKLGSTVGIIAAQSIGEPG
TQLTLRTFHTGGVVAGGDITSGLPRVEELFEARKEPKGEAVISKIAGTAHLFGFEKDSDK
RFVRIDHSEMVSDIYDIPEDWSIAVSDGDEIVMGATLASQDEAIITAQNNGRVRIEDHKV
IVSYEVKESEEYDIPTTAKLTIKEGEKVEPGQAITEGSLNPHTVLRINGRDACQRYLLRE
IQEIYVNQGQDINDKHFEVIINKMLSKVQIMRSGDTAYLPQDLVNRLEIRRVNEELVEQG
KQPARYLEVLLGVSKAALETDSFLSASSFQHTIKVLSAAAISSREDPLFGLKENIMIGKL
IPAGTGFKPGQFSDEAQGDDVYDAVGEGRVLTLFDELETNEAAADHKVDKTDMGIAGSVE
EDSDLKETEIGE
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
gtggaaacaaagggattgaagacactgcggattggacttgcatctcctgaggagattcgt
aaatggtcttatggtgaagttctgaaaccagagaccatcaattatcgaaaattgcgtccc
gaaaaagacggtttgttttgtgaggccatctttggacccacacgtgattttcactgttat
tgtggaaaatataagaatagtcgcaaaaaggggattacatgcgatatctgtaatgtagaa
atcacgcgatcttctgttaggcgtgaacgaatgggtcatatcgatctggcagcgcccgtg
gcacacatctggtacactcgccgcatcccatcatacttaggattgattttaaatatctca
cgcaggaacctggatcgggtgttgtattttgctcaatacatcgtgacctacgtcaatgaa
gacgctcggcaaaaagcccttaaacgcttagatgatgaaatcagcctttctgaaagagac
ctggaagacaaaatcaatgcgcagattgtcgaggagaaaaaagctcgagacagagcccta
aaagaaaatgatgcggagcgcgttcggcttcaggagagctacgatgaacaaatcggtaat
cggattgagccggtgatcaaggaaggacaacgcttggaaagcgaaatccagacccggata
ggaaagaaaatccgcaaggcgatcgtgttcaatgtgctggataaagaagaattgattgtt
gatgtcggtgaagaggtgatgcctgcacatctcagccaggtgcagaaaattgtcaaggat
atgattgaggtgctggaagcagacctgaaagaacaacgcgatcttgaattggaacacttg
tccatgcagagggaagagatcagggcggcttccgagttaaaaatggaagaactgcgcaat
atgctggttgatcaagctgaggagagccaatcagaatcagcgcgttcacgtgacgagtta
catgagctggaaccctttaagtttctaagcgaagcacgctatcgcgagttaaaatcccgt
tgggggcaggtctttcgggcggatatgggagcagaagcattttatgatattctcaaacga
attgatctggatgcattggctgaagagctatgggaagagattaataccacccgcagcaaa
caaaaacgaaaaaaagccacccgtcggttgagtgtgatcgaggcttttcgccgctcgaat
aataaaccagaatggattattatgacggttttgccggtcatcccgcctgatttgcgtcca
atggtacagctcgacggtgggcgttttgcaacctcagatttgaacgacctgtatcgccgg
gtcattaaccgcaataatcgcttgaaacggttgttagaactgggcgcgcctgatgtgatt
gtccgcaatgaaaagcgtatgttgcaggaagcggttgactcgctaattgataattctcag
cgaggtaaagcgctttcacgtcgtggacggcgagaattacgttccttgagtgatatgctc
aaaggaaagaagggccgtttccgtcggaatcttttagggaagcgagtagatttttccggc
cgatctgtgatcgttgttggcccatatttaaaattgcatcaatgtggtcttcccaagtct
atggctttagaattgtatcgaccctttgtctattctcagttaatgaagcaggaatatgca
ggaaacattaaaagcgccaaacgtttaattgagcgcggccgtccagaagtttgggaaatc
ctggaagaggtgatcaaaaatcggccggtgctgttgaatcgagcccccacactgcatagg
ttagggatccaggctttcgagccgattctgatcgaaggtaatgcgattcaattgcatcct
ttggtgacgactgccttcaacgcggacttcgatggcgatcagatggcggttcatgtgcca
ttatcagacaaggctgtcaccgaagctcgtgaattaatgctggcgaccaagaacttgctc
aaaccagctaatggtgaacccatcatcagcccatcaaaagatatggttttgggtgtttat
tacctcaccatggaagtagatgaaaaacaagcaggcgatccccgcgccttttccagtatc
gatgaagtgctgatggcttattctatggggctggtccatgtgcatgagaaaattaaattg
ctaactgaaacctggtacgatcaggacaatactcgtatggagaatccagcgaccaggatc
attgagaccacagttggtcgcacgattttcaacaatgccctgactgagcgcatgcgcttt
tacaatcatgaattggataagaatggtgtgagagacctggttgcagaggtctatgatatc
tgcggacaggaagaaacctgcatcatcgctgatcaaattaaagatattggttttcaatat
gcaacccgctcggggataacgattgctattgccgacattaatgtgcctgccagtaaagca
gaaattttacaggctgcacaagaaaaagtggatgaaatagatcaaagtttagaacgtggt
attacgaccgaagatgagcggaacaaaattgtcggtgatatttgggaggaaaccggtcat
caggtcacggttgaggtagaaaaagcgcttgatccaatgggagatttgacaaccatggcg
aaaagcggtgcaagtaaaggtggtatcaacgcaatttctcagttggcgggcatgaaagga
ttggtttccgatccgagcggtcgcgtcatcaccatgccgattcgctcgaattatcgagaa
ggtatgaccccgttcgagtactatatttcaacacatggcgctcgtaaaggcttggctgat
accgcgttaaggactgccgatgcaggctaccttacccggcgcctggtggatgttgcccaa
gacgtgattgtaaatgaagaagattgcggcacgtatcagggcatttggatcaacgcagat
gataatatcgctgggcagtctttcgagaaacgtttgtatggtcgggttctcgcggatcga
gtcattaacccggaaactggcgaaattgttttcaatcgaaatgatcttctaacccatgat
cgagtgaaaataattaaagaacttgggatttctgctgttcatgtacgctctccgttgact
tgtgagatgattcacgggatttgcgccaattgttatggaatggatcttgcccggggagaa
atggtaaaactgggctcaacggtggggatcattgctgctcagtcgattggtgagccagga
acgcaattgacattacggaccttccacaccggcggtgtggttgctggtggcgacattacc
tccggccttccccgtgtcgaagaattgtttgaagcccgtaaagagcccaagggagaagca
gtgatttccaaaattgccggcactgctcacctctttgggtttgagaaagattcggataaa
agatttgtgcggattgaccacagtgaaatggtttcggatatctatgatattccagaggac
tggtcaatcgctgtcagcgacggagatgaaattgtcatgggagcgacgctggcatcccag
gacgaagcgattattaccgcccagaataatggacgtgtgcgaatcgaagaccataaggtg
atagtttcttatgaagtgaaggaatcggaagaatacgacattcctacgacagccaaactg
accattaaagaaggtgaaaaagtagaaccgggtcaagcgataacagaaggatcattaaac
ccccacaccgtcctgagaattaatgggcgtgatgcatgtcagcgatatttgttgcgtgag
atccaggagatctatgttaaccaggggcaggatatcaatgacaagcattttgaagtcatt
atcaacaagatgcttagtaaagtgcagatcatgcgatcgggtgatacggcttatttaccc
caggacctggtcaatcggctggagatcaggcgtgtcaatgaagaattggttgaacaggga
aaacaaccggcaaggtatcttgaagtcttgctgggcgttagcaaggcagccctggaaaca
gattccttcctttccgcatcttcatttcagcatacaataaaagtgctttcggcagcagcg
atttcatcacgcgaagatcctttgtttggcttgaaagagaatattatgatcggcaaattg
atccctgctggcacaggttttaaacccgggcaattttcagatgaagcccagggcgatgat
gtctacgatgcggttggggaggggcgtgtgctcaccctgtttgatgaattagaaacgaat
gaagccgctgcagatcataaggttgataagacggatatgggcattgccggctcggttgaa
gaggattccgatctaaaggaaactgaaatcggcgaatag
DBGET
integrated database retrieval system
