Candidatus Brevifilum fermentans: CFX1CAM_1967
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Entry
CFX1CAM_1967 CDS
T04881
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
abat
Candidatus Brevifilum fermentans
Pathway
abat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFX1CAM_1967 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abat03019
]
CFX1CAM_1967 (pnp)
03016 Transfer RNA biogenesis [BR:
abat03016
]
CFX1CAM_1967 (pnp)
Enzymes [BR:
abat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CFX1CAM_1967 (pnp)
Messenger RNA biogenesis [BR:
abat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFX1CAM_1967 (pnp)
Transfer RNA biogenesis [BR:
abat03016
]
Prokaryotic type
tRNA degradation factors
CFX1CAM_1967 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_5
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
SMX55032
UniProt:
A0A1Y6K5P6
LinkDB
All DBs
Position
I:2213729..2215915
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AA seq
728 aa
AA seq
DB search
MQPNPKIYRTKLGDKEIIIETGKLAGQAGGSVTVRQGDSLMFCAATLGGIREGLDYFPLN
VEYEERMYAGGKIPGSFFRREGRPRDDAILIARMTDRPIRPLFPDGMRNEVQVILMSLSA
DTENPLDILGINAASIALIISDIPWAGPIGAVRIGYINSELIVNPTIKEMEDSRLDLIVA
GTKQAIAMVECGAIEVSEQVMVEALDLAHRAIQPIIEIQEQMAREVGKVKREVELTTLDQ
ALVDQVKPAVVDRLLDILRQPYVKENLYNGIRDLKEAVIEELSAEKSETLTETELKTLKN
NIGDAFEEVEKEVIRKRILSDRIRPDGRNPQDVREIWCEVNTSPRAHGSGLFTRGETQVL
TLATLGTPREAQELDNLIPTETKRYIHHYNFPPYSTGETGRLFQSRREVGHGMLAERALR
AVLPDEKDFPYTMRLVSEVMSSNGSSSMASTCGSTLALMDTGVPIKRPVSGVAMGMIKEG
DDYVILTDILGMEDHLGDMDFKVTGTTEGITALQMDIKISGITTQIMSEALEEARKARLH
ILDKMLAVIDIPRSDIKDHAPRIEVIKVSVDKIGAVIGKGGETIRSIQEETGTRIDIEDD
GTIFIASTDGVGFKAARERIERLTEEVKVGHIYTGKVVRIADFGAFVEILPGQDGLVHIS
QLDTSHVSKVTDVVKEGDEITVMVTNIDSQGKIRLSRQALLEGWTLEEAQFHDSQGNKGS
NRPRSRRR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccaacccaaaaatttatcgtaccaaactcggtgacaaagagatcatcatcgaa
acgggcaaactggccggacaggctggcgggtccgtgaccgttcgccagggcgacagcctc
atgttctgcgctgccaccttgggcggcatccgtgaggggctcgattacttccccctaaac
gttgaatacgaagaacgtatgtatgccggtggaaaaattcccggctcgttcttccgccgc
gaagggcgaccccgcgatgatgccatcctgattgcccgcatgaccgatcgcccgatccgc
cccctgttccccgatggcatgcgcaacgaggtgcaggtgatcctcatgtcgctctccgca
gataccgaaaaccccctcgatatcctcggcatcaacgccgcatcaatcgctctgatcatt
tctgatattccctgggcagggccgatcggcgcagtacgcatcggttacatcaacagcgag
ctgatcgtcaatccaaccatcaaggagatggaagattccaggctggacctgatcgttgct
ggcacaaaacaggccattgccatggtcgaatgcggcgcgatcgaggtctccgaacaggtg
atggtcgaagccctggatttggcgcatcgcgccatccagcccatcattgaaatccaggaa
cagatggcgcgtgaagtcggcaaggtaaaacgtgaggtcgaactgaccaccctcgaccag
gctctggtcgatcaggttaagcctgccgttgtagaccgtctgctggatattctcaggcag
ccctatgttaaagaaaacctgtacaatggcatccgagatttgaaagaagcagtgattgaa
gaactgtctgctgaaaagtctgagactcttaccgaaacagaactgaaaaccctcaaaaat
aacattggcgacgccttcgaagaggttgaaaaagaggtcatccgcaaacggattctctcc
gaccgtatcaggcctgatgggcgcaacccgcaggatgtgcgtgagatctggtgcgaggtc
aacaccagcccgcgtgcccatggttccggtttgttcactcgcggcgagacccaggtgctc
actttggcgacactcggcacgccccgcgaagcccaggaactcgataacctgatccccacg
gaaaccaaacgttatattcaccattacaacttcccgccttattccaccggtgagaccggc
cggctgttccaatcccgccgtgaagtcggtcatggcatgctggcagagcgtgccctgcgt
gcggttcttccggatgaaaaggattttccctataccatgcgcctcgtctccgaggtgatg
tcttccaacggctcatcttcgatggcatctacctgcggttctaccctggcgctgatggac
actggcgtgccgatcaaacgacctgtctccggcgtcgccatgggcatgatcaaagaaggc
gatgattatgtcatcctgaccgatatcctcggcatggaagatcacctgggagacatggac
ttcaaagtcaccgggacaactgaaggcattactgcccttcaaatggacatcaaaatcagc
gggatcaccacgcaaatcatgtcggaggcgctcgaagaagctcgcaaagcccggctgcac
atcctcgacaaaatgctggcagtcatcgacataccccgctccgacattaaagatcacgcg
ccgcgcatcgaggttatcaaagtgtccgttgataaaatcggcgcagtgatcggcaagggc
ggcgagacgatccgcagcatccaggaagaaaccggcactcgcatcgacatcgaagacgac
ggcaccatctttatcgcttcaaccgacggggtcggctttaaggcggcccgcgaacgcatc
gagcgcctcacggaagaggttaaagtcggacatatctacaccggcaaagtggtacgcatt
gctgacttcggcgcctttgttgaaattctccccggccaggacggcctggtgcatatctcg
caactggataccagccacgtcagcaaagtgactgatgtggtcaaagaaggcgatgaaatc
accgtgatggtcaccaatatcgacagccagggcaagatcaggctctctcgccaggcgctg
ctggaaggctggacgctggaagaagcccaattccacgatagccaggggaataaaggcagc
aatcgccctcgcagccgtcgacggtag
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