Georhizobium profundi: D5400_06870
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Entry
D5400_06870 CDS
T05798
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abaw
Georhizobium profundi
Pathway
abaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5400_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abaw03019
]
D5400_06870
03009 Ribosome biogenesis [BR:
abaw03009
]
D5400_06870
Enzymes [BR:
abaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D5400_06870
Messenger RNA biogenesis [BR:
abaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D5400_06870
Ribosome biogenesis [BR:
abaw03009
]
Prokaryotic type
rRNA helicases
D5400_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZN73635
UniProt:
A0A3Q8XRP5
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All DBs
Position
1477506..1479389
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AA seq
627 aa
AA seq
DB search
MTSSIENAPASLPAAIHPALSSALEAHGYAQLTPVQTAMLDDANAGADLLVSAQTGSGKT
VAFGLAIASTLLDGAETFGAAGRPLGLVIAPTRELALQVQRELDWLYAVAGVRTATCVGG
MDMRNERRSLERGAHLVVGTPGRLRDHINKGALDLADLRAVVLDEADEMLDLGFKDDLEF
ILAAAPDDRRTLMFSATVSRPIAELAKTYQRDAVRVAVTASTEQHADIDYQLMLVRRDER
EHAIINTLLHSDSKSALVFCHTRESVRHLTARLGNRGFAVVALSGELAQSERSSALQAMR
DGRAHVCVATDVAARGIDLPNLDLVIHADVPSNPATLLHRSGRTGRAGRKGVCVLIVPEH
RRGAAARVLSLAKLNAATVPAPGIAAIEARYREQILEAAVSTPPVEQHEEPFIAELLEKV
TPEQLAAAYLRQQLASRPIPEDVAEIPIRPITPRAPKGERGSERDGSAPREPREPRSEMA
GGVWFKLSLGRKQRADPKWLLPMICKAGGVTKKDVGSIKIDETETRFEIAGDKADAYVEH
LAERGTGEKGVTIVPLDGGSSHRSAPRGKPAGAKPSGPKPAKRAAEKRADWSDRPARADE
ARKGPKADRPGKPGKPGKFKGAKRRDA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtccatcgaaaatgcgccggcatccctgccggccgccatccatcctgctctc
tcctccgcgcttgaagcgcacggctacgcccagctgacgcccgttcagacggccatgctg
gacgacgccaatgcgggggcggacctgctcgtctcggcacagaccggatcgggcaagaca
gtcgccttcgggctcgccattgcgtccacgctgctcgatggcgcggagaccttcggcgct
gccggacggccactcggtctcgtgattgcgccgacacgcgaactggctttgcaggtccag
cgcgaactcgactggctttatgccgttgccggtgtgcgcaccgccacctgcgtcggcggc
atggacatgcgcaacgagcgccggtcgctcgaacgcggcgcccatctcgtcgtcggcacg
cccggtcgtctgcgcgatcacatcaacaagggtgcgctcgatcttgccgatcttcgggcc
gtcgtcctggatgaggccgacgagatgctggatctcggcttcaaggacgatctcgaattc
attctcgccgctgcaccggacgaccgccggacgctgatgttctcggcaaccgtctcgcgg
ccgatcgccgagcttgccaagacctaccagcgcgatgcggtgcgggtcgccgtcacggca
tccaccgagcagcatgcggatatcgactatcagctgatgctcgtgcgccgcgacgagcgc
gagcatgccatcatcaacacgcttctccattccgacagcaagagcgcgctcgtcttctgc
cacacgcgcgaatccgtgcgtcatctgacggcgcggctcggcaatcgcggttttgcggtg
gtggcgctctcgggcgaactcgcccagtcggaacgctcgagcgcgctgcaggcgatgcgc
gatggtcgagcgcatgtctgcgtcgcgaccgatgtcgccgctcgcggcatcgacctgccc
aatctcgatctcgtcatccatgcggatgtcccgagtaatccggcgacgcttctccaccgg
tcggggcgtaccggccgagccgggcgcaagggcgtgtgcgtgctgatcgtgcccgaacat
cgccgtggtgcggcagcaagggtgctgtcgcttgcaaagctcaatgctgcgaccgttccg
gcccccggcattgcggccatcgaggcgcgctatcgcgagcagatcctcgaagctgcagta
tccacgccaccggttgagcagcacgaggagccgttcatcgccgagcttctggaaaaggtg
acgccggaacagcttgctgccgcctatcttcgccagcaactggcttcgcgccccattccc
gaagacgtggccgaaattccgatccgtccgatcacgccgcgcgcgccgaagggcgagcgc
ggctccgagcgggacggcagcgctccgcgtgaaccgcgggagccgcgctccgaaatggcc
ggcggcgtctggttcaagctgtcactcgggcgcaagcagcgcgccgatccgaagtggctt
ctgccgatgatctgcaaggcaggcggcgtcacgaagaaggacgtcggctccatcaagatc
gacgagaccgaaacgcgcttcgagattgccggcgacaaggccgacgcttacgtcgaacat
ctggcggaacgcggcaccggtgaaaaaggcgtaacgatcgtgccgctcgatggtggctcc
agccataggtctgcaccgcgtggcaagccggccggcgcgaagccatccggtcccaaaccg
gccaagagggctgccgaaaagcgtgcggactggtcagatcgccccgcgcgggccgacgag
gcgcgcaagggtccgaaggcggacaggccgggcaaaccggggaagcccggcaagttcaag
ggcgcgaagcgccgggacgcttga
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