Acinetobacter baumannii ZW85-1: P795_9155
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Entry
P795_9155 CDS
T02954
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abaz
Acinetobacter baumannii ZW85-1
Pathway
abaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P795_9155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abaz03400
]
P795_9155
Enzymes [BR:
abaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P795_9155
DNA repair and recombination proteins [BR:
abaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P795_9155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHB91556
LinkDB
All DBs
Position
complement(1998768..2002229)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIATQHSSLLVLVARNNQHVAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGVLLISASTLAQRVAPY
SWVLGEHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQESPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEGRSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFNKEQMQSQSMFTTYLPKNCIVITTNDIDTDLTSFW
KEVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRMLVSAETIEEKAGALNLKTE
QPPKLPVDPKKEKPFSAVKKYIDEANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFQISQFAIAITNAPLDRGLLLTDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
EPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEEYEKRIQFI
NDLLQKLMSELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttgcaacagctcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagcagctttattgcttaaagaaattgccactcag
cattcttctttattggtattagtcgctcgaaacaaccaacatgttgctcaattagaaagt
gaacttgagttttatggagttaagccgacaatttttccggattgggaaattttgccttat
gaccgtttatctccccatcaagatattgtgtcagaacgtcttgctattttatctaatatg
ccccagcaaggcgtattattgatttcagcaagtaccttggctcaacgggttgcgccttac
tcatgggtattgggagaacactttgatataaaagtggggcaaaaatttgatttagaacaa
caaaaactaaggttagttcaggcgggttaccacttagtagatacagtttatgaccatggt
gagtttgctgtacgcggcagtattatggatatttttgcatcgggtcaagaatctccaatc
cgcatagatttatttgacgatgaaattgattctttaaaattctttgaccctgaaactcaa
agaacaacaaccacactaaaaagttttacggttttacccgcgaaagaattccctttaaaa
gaaggacgttctgtatttagagatcgttattctgagttttttcctactgccaatcctaag
aaaaatccaatttatcaggacgttttagatggtatagcatcgcctggtattgaattttat
ttaccgctattttttaataaagaacaaatgcagtcacaaagtatgtttacaacatactta
ccaaagaattgcattgtaattacaactaatgatattgatactgatttaacgagtttctgg
aaagaagttatgcgtcgttatgaagaccgacgccataatatggatcaacctattcttgct
ccagaagagctatttatttctccaaatcatctgctaagtgctttaaaccagtttccacga
atgcttgtaagcgcagaaactattgaagaaaaagctggtgcacttaatcttaaaactgaa
caaccacccaagttgccagtcgatccgaaaaaagaaaaaccatttagtgccgtaaaaaaa
tatattgatgaagcaaatcatcccgttctattggttgcggaaagtgcaggacgtcgtgaa
agcttaaaagatgcgttgcgttcaagtttaggcgagattccgaatgtagagaattttgag
caattccaaattagtcagttcgcaattgctattactaatgcacctttagatcgtggttta
cttttaactgatcaattaacggttatttcagaaaatcagctttacgagcaccgagttgta
cagcgtcgtcgcaagcgtcaacaggaagtttcagaagagtttctgatccgaagcttaact
gagctaagcattggtgctcctgttgtacatatcgatcatggtgtggggcgttatgctggt
ttaattacactcgcgattgaaggacaagactatgagttcttacaactagattatgccgaa
gatgcaaaagtctatgttccagtaacgaacttgcatctaattagccgttatagtggtggc
gaaccggatttagcaccgttacataaaatcggtactgatgcgtggagtaaagctaagcgt
aaagcattagagcaaattcatgacgttgcagctgagcttttacatattcaggcacgtcgt
cagtcaaaacccggctttgcttttgaactggaccagtcgctctatatgcaatttgcgagt
ggctttgcgtatgaagaaacacttgatcaggctaatgcaattgaagccacactctatgat
atgcagcaagcaaaaccaatggataggttggtgtgtggtgatgtgggttttggtaaaacc
gaggtggccatgcgtgcagcatttgtagcggtacaaaatggcaaacaagttgctgtttta
gttcctacgactttactagctcaacaacattatgagtcttttaaagaccgttttgctgat
tggccagtacgtattgaagtgctctcacgttttggttcaaacaaaacacatttgaaaaat
attgaagacttggcaaatggtaaagtcgacattgtggtaggtacacataagcttctacaa
gagaatgttcagtttaaagatttaggtttaatggttgtagacgaggagcatcgctttggt
gtgcgtgataaggagcgtatcaaagctttacgtgccgatgttgatatgttgacacttaca
gcaacgccaattcctcgtacgcttaatatggctttttcgggtatgcgtgatttgtcgatt
attgcgactccgccagcccgtcgattagcagtaaaaacctttgtgcaagagcatacagat
gcttcaatcaaagaagcgattttgcgtgagttacttcgtggtggacaagtttatttctta
cataatgaagtagagaccattgagcgagctgccgaaaatattcgtgtgcttgtacccgaa
gcacgtgtagcggtagcacatggacaaatgcgtgaacgcgaacttgagcaagttatgcag
cagttctatcacaaagaatataatgtgctggtgtgctcaaccattattgagacaggtatc
gatgttccaaatgccaatacaattttaattgaacgtgcggataaacttggtttagcgcaa
ttacaccagttacgtggccgtgtaggtcgttcgcatcaccaagcatacgcgtatttatta
gtaccttcgattaaacacttaaaaggtgatgccgaaaaacgccttgatgcgattcaacgt
gcttcgacattaggtgcaggctttatgctcgctacggaagatttggaaattcgtggagca
ggcgaattgttaggcgagcaacaaagtggctcaatgcaggcgataggatatagcttgtat
atggaaatgcttgagaaagcgactaaagcaattcaacagggtaaaaccccgaattttgat
gctccattgtcgttaactgccgaaattaacttacatattcctgcacttattccagatgat
tatctgggtgatgttcatcaacgtctattattctataaacgtattagtaataccgataca
caggaaaaactagataacatccgtatggagcttattgaccgtttcggtattccaccgcag
tcggttaagcacttatttagcgtgcatcaaatccgtttgaaagcagaacatttaggtatt
acgaaaattgatattaatactcaaggtggaaatattgagttttcaccagatacgccagtt
caggccattagtattattcagttaatgcaaaaaaatccgacctattaccgtatggaaggc
ggacaacgtttgaaggtgatggtgcagcttgaagagtatgaaaaacgaattcaatttatc
aatgatttattgcaaaaattgatgagtgaactacatgcctga
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integrated database retrieval system
