Acinetobacter baumannii AB307-0294: ABBFA_02341
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Entry
ABBFA_02341 CDS
T00795
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
abb
Acinetobacter baumannii AB307-0294
Brite
KEGG Orthology (KO) [BR:
abb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abb03019
]
ABBFA_02341 (hrpB)
Enzymes [BR:
abb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ABBFA_02341 (hrpB)
Messenger RNA biogenesis [BR:
abb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ABBFA_02341 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
AAA_30
SLFN-g3_helicase
TsaE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ATY44774
UniProt:
A0A5K6CSP1
LinkDB
All DBs
Position
complement(2513566..2517423)
Genome browser
AA seq
1285 aa
AA seq
DB search
MLNGLNIDQWVMARDRYRLNRLRKDKKANTAEIEKLFEQSNAKVRQRFERLPKIKLNQDL
PVTQYTDRLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAARS
VSQRIAEEVGEKLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIID
EAHERSLNIDFIMGYLKQLLPKRPDLKVIVTSATLDVNRFSNYFNNAPIFEVEGRSYPVE
VRYRPISEMNIGGSDDDEFDDFEENLPRAVVQAVEECFADAEEKGHPEHADILIFSSTEQ
EIRELQETLQKYGPRHTEILPLYARLAVSEQQKIFSPSGKGRRIIIATNVAETALTVPNI
RYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFLSR
PEFTEPEIKRTNLASVILQMQSLGLGELENFDFIEPPDFRLVNDGRKLLIELGALNEKKN
ELTKVGQMMARMPIDPRLARMIVGGAHFGVLKEILVVVSALAVQDPRERPADKQMQADQK
HALFKEADSDFLFYLKLWDTLNPKGEAGMSENKRRQFAKQHFLSWLRLREWKQTHQQLVE
LAEGLKLSFNEKPANYENLHRALLTGLLSFIANKTDERNTFMAVRQQKAKVFPASTLHKT
NTAWVMAFEMVETSQVYLRTLAKIDPEWILLAARDLLKYHYFEPHWSKKAGIVNAYAQIS
LFGLIIEPKRLVNFEKVDQPAAHEIFLRDALTTGNLGTVPPFLKHNLLKLEEVERVEDKL
RRRDLVVDEETIYQFYASKIPEEIASRRSFEDWRATVEAKNPRYLYVEDDALWLNDRPTT
QQFPDHLHNGQLRLATTYRFDPSHDEDGATVQIPVQALPQVDENIWSWGIPGWRLDLIEA
LLKALPKDKRRNLVPIPDTARKLMQGIDAVHLRQHIFSYLAFALRGEQITEKDFSFERID
PYLVPFIKVIDEKGKLIAKGRDLAELKARCRVETHRPVKQQKGEFKTFPENFTFEASQKV
TGVVVKQYQALVPTKNFAELEAKDESGVVIQTFNDQAEAIKQHREGIIRLVHMQLGDLVR
QLKKQISKPLALAYSPLGDKAKLEQMLVYATLQMAITTLPINAGEFNQLLEQVKKQFLSY
GQQALEQLSDIYIQWQQIRRQLLVLDPDVFGRSIDDIEDQLDLMSLGNFVYCQPVDLWQE
YPRYLKALLLRLDRLPNNLQRDHAAIDDVDPWMDKVFKFKNDPRIKELYLMLEELRISLF
SQPMKTKMPISPTRLQKLWDRLGIS
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaatggtttaaatatagatcaatgggtgatggcgagagatcgttaccgtttaaat
cgtttacgtaaagataaaaaagccaatactgcagagattgaaaaattatttgaacaatct
aatgcaaaagttagacagcgttttgaacgcttaccaaaaatcaaattaaatcaggatctt
cctgtaacccaatatactgaccgtttaattgaagcgattcaaaagcatcaggtcattatt
gtggcaggtgaaacaggttcagggaaaactactcagctccctcaaattgcaatgttagca
gggcgtggcttaacgggcatgattggtcacacccagccacgtcgtttagctgcacgtagt
gtgtcgcagcgtattgcagaagaagtcggcgaaaaacttggcgagtcaattggttttaaa
atccgttttaatgaacaaggttcgcaagattcgattgtccgtttaatgaccgacggtatt
ttgcttgccgagttaggcaatgaccgcttcttgtctaaatatgacaccatcattattgat
gaggcgcacgagcgctcactcaatatcgattttattatgggctatttaaagcagttactg
ccaaaacgcccagatttaaaagtcatcgtgacttcagcaactttagatgtaaatcgtttt
agtaactattttaataatgcaccaatttttgaagtagaagggcgtagttatccggttgaa
gtgcgttatcgcccaatttcagaaatgaatattggtggtagtgatgacgacgagttcgat
gactttgaagaaaacctgccgcgtgcagtcgtacaagctgtagaggaatgctttgctgat
gccgaagaaaaaggccatccagaacatgcagatattctgattttctcaagcacagagcaa
gaaattcgagaattgcaggaaaccttacaaaagtacgggccgagacataccgaaatttta
cctttgtatgcgcgtttagccgtttctgagcaacaaaagatttttagcccaagtggaaag
ggccgccgtattattattgcgacgaacgttgcagaaactgcactgactgttcctaatatt
cgctacgtgattgatagcggctttgcacgtatatctcgttataactaccgttcacgcgtg
caacgcttaccgattgaggcaatttcacaagctgcagcaaatcaacgtaaagggcgttgt
ggtcgtgttgctccaggtgtttgtattcgtttatatagcgaagaagactttttaagtcgt
cctgagtttaccgaacctgaaattaagcgaaccaacttggcatcggttattctgcaaatg
cagagcttaggtttaggtgagctggaaaactttgatttcattgagccgccagatttccgt
ctagtcaatgatggtcgtaagctactcattgagttaggcgcgctgaacgagaagaaaaac
gaactaaccaaagtcggccaaatgatggcacgtatgccgattgatccaagacttgcacgt
atgattgtgggtggggctcattttggtgtactcaaagaaattttggtggtggtcagtgca
cttgcagttcaagacccgcgtgaacgtccagcagataaacagatgcaagctgatcaaaag
catgcactattcaaagaggcagattcagattttctgttttatttaaaactttgggatact
ttaaatcctaaaggtgaagcaggaatgtcggaaaacaagcgtcgtcaatttgctaagcag
catttcttaagctggttacggttacgtgaatggaaacagacacaccagcagctagttgag
ctggccgaaggtttaaaacttagttttaatgaaaagcctgcaaattatgaaaacttgcac
cgtgctttgctgacaggtttattgtcttttattgccaataaaactgatgaacggaatacc
tttatggcagtgcgtcagcaaaaggctaaagtttttccggccagtacattgcataaaacc
aatactgcgtgggtgatggcttttgagatggtggaaacctctcaggtctatttacgtaca
ttagcaaaaattgatcctgaatggattttgcttgctgcacgcgacttattgaaatatcac
tatttcgagccacattggtctaaaaaagccggtattgtaaatgcttatgcacaaatttca
ttgtttggtttaattattgaaccgaagcgtttggttaattttgaaaaagttgatcaacct
gctgcacatgagattttcttacgtgatgcattaaccacaggaaatctggggacagttcca
ccatttttaaaacacaacttgcttaaacttgaagaagtagagcgagttgaagataaatta
cgtcgccgcgatttggtggtcgatgaagaaacaatttatcagttctatgcgtcgaaaatt
cctgaagaaattgcgagtcgtcgtagttttgaagactggcgtgcaactgtagaagcaaaa
aatccgcgttatttatacgtggaagatgatgcgctttggctcaatgaccgtccgaccacg
cagcaattccctgatcatttacataatggtcagttacgtttggcaactacttatcgcttt
gacccaagtcatgatgaagatggcgcaacggtccaaattccggtacaggcattgcctcag
gtagatgaaaatatttggtcgtgggggattccaggctggcgtttagatctcattgaagcc
ttattgaaagccttaccaaaagataaacgtcgtaacctcgtaccaattccagatacggcg
cgtaagctcatgcaaggtattgatgctgtacatttgcgacaacatatctttagctatctg
gcgtttgctttacgtggtgagcagattacggaaaaagatttttcatttgaacgcatagat
ccgtatttggtgccttttattaaggtgattgatgaaaaaggtaaattgatcgccaaaggc
cgtgacttggctgagttgaaggctcgttgtcgcgtagaaacgcatcgtccggtgaaacag
caaaaaggtgaatttaaaaccttccctgaaaactttacctttgaagcttcacagaaggtg
acaggtgttgttgttaaacaatatcaagctttagtgccaactaaaaattttgccgaactc
gaggcgaaagatgagtccggcgtggttatacaaacatttaacgatcaggcagaggcgatt
aaacaacatcgcgaaggtattattcgtctggtccatatgcaacttggtgatttggttcgt
cagttgaaaaagcagatttcgaaaccgcttgcgttggcttattcacctttaggtgataaa
gctaaacttgagcaaatgctggtatacgcgactttacaaatggcaattacgactttgcca
atcaatgctggtgaatttaatcaactgctagaacaggtcaaaaaacaatttttgagctat
gggcagcaagcacttgagcaattaagtgatatttatattcagtggcaacaaatccgtcgt
caacttttagtacttgatccggacgtatttggacgcagtatcgatgatattgaagatcag
ctagatttaatgtcactcggcaattttgtctattgccagccagttgatctttggcaggaa
tatccacgttatttaaaagcgctgctattgcgtttagatcgattgccaaataatctacag
cgagatcatgctgctattgacgatgtcgatccatggatggacaaggtatttaagttcaaa
aatgatccaagaatcaaagaattgtatttgatgctggaagaattacgtatttctttattt
tctcagccgatgaaaaccaagatgcctatttcgccaactcgactacaaaagttatgggat
cgtttgggaatcagttaa
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integrated database retrieval system
