Acinetobacter baumannii AB307-0294: ABBFA_03107
Help
Entry
ABBFA_03107 CDS
T00795
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
abb
Acinetobacter baumannii AB307-0294
Pathway
abb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABBFA_03107 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abb03019
]
ABBFA_03107 (rne)
03009 Ribosome biogenesis [BR:
abb03009
]
ABBFA_03107 (rne)
Enzymes [BR:
abb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABBFA_03107 (rne)
Messenger RNA biogenesis [BR:
abb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABBFA_03107 (rne)
Ribosome biogenesis [BR:
abb03009
]
Prokaryotic type
rRNA processing factors
ABBFA_03107 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATY45525
UniProt:
A0A5K6CV41
LinkDB
All DBs
Position
3332617..3335949
Genome browser
AA seq
1110 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHY
EIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAAAQKKA
NHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQ
FGQVAVPAVAEVAPVQSNNAYISQSPVKQDVREHVEKDDKSQQQRQNNKKRKHKEQREQH
HQSHEQQHQVHEEVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQHTENAVPRRDRNNQQ
RPNRPNRHRDPSVLNENQNTLVVVDEKQIKVDVIDAPKHDVMNTALIINVDQGQSEIVAL
TPERRHVERVETTSTEVAQEPTPAPVVAEKAAVVETKEEAQPSQEAAQPQIKRASNDPRM
RRRQQREAKHAKAATPSIAPSQIPTLAQHTIGSLIRHVYGEDCTVLIEQFGLVPTFNRAL
QKFAEQYASTLVVEVTAETEEKKPVTRDAELPSHKPAEEAEPAPVLPLTPPQAPAPRVAN
DPRERRRLAKLAAEQAFEQVKQQHSAQEEVATPAPVAEETVAAPTAETQATVEPAQQPLE
LNQSTEVVQPEAAPAEEKATEETVAEAPAAKEPAPSKAASKAKAAAEETVAPTEATTDAE
SEDVKADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcatgccgaagaagttcgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtcacccgcgtagaaccatctttagaagctgtttttgttgaatat
ggcgcaggtcgtcaaggcttcttgtctatgcgtgaaattgctaacagctattttcaggca
gacccacgtcaaacttcaaacattcgtgaacttattactgaaggcacagagcttttagtt
caggttgaaaaagaagaacgtggtaataaaggtgcagcactttctacgtttatttccctt
gcaggccgttatttagttcttatgccaaataacccgaaaggtggtggtattagccgtcaa
atttcaggttcagtacgtgaagaattaaaagaaattttagcttctttaaatgtacctcgt
ggtatgagcgttattgtacgtaccgctggtattggacgtacccaagaagaattacaactc
gatttgcaacacttgcttgacctttgggcacaaatccaaggtacagccagctcaggccct
tctccgatgcttgttcatcaagaagcgggtgtagtaacacgtgcaattcgtgattactta
cgtgatgacgttgctgaaatcttaattgatagcgaacaagcttataacgaagcatataac
tttgttaaagcagtgatgccgcgtcaattagacaaattaaaaacttatactttaaacgag
ccattgtttgctcattttggtattgaaagccaaattcaaactgcttacgagcgtgaagta
aaacttccttctggcggttcaattgtgattgaccagactgaagctttagtttcaatcgat
attaactctgcgaaatcgactcgtggacatgatgttgaagaaactgcactgaatactaac
cttgaagcagcagaagaaattgctcgccaacttcgtttacgtgacattggcggtttagtt
gttatcgacttcatcgatatgactaaagaacgcaatcaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgtgcacgtatccagttcggtcaattgtctcgttttggc
ttaatggaaatgagccgtcaacgcttacgcccatcgcttgaagaagcaacaggttatgta
tgccctcgctgtcatggtacaggcatggttcgtgatttacgttcgctttctctttcaatt
atgcgtaaagttgaagagattgcacttcgtgaacgtcatggtgaagttcaagttgaagtt
ccagttgaaattgcagcctttttgcttaatgaaaaacgccatagtctggtgtatttagag
caaacttctggtgtacgtgtgactgtattgccacacccgcacttagaaactccacattac
gaaattgcatataacccagatggctttgctccatctagctatgaacgtacagaagcaacc
cgttctagcgagaaagagttaggttatgagtcttctgaatggcatttagaagaagcagat
catggccatgctcatgtaactgctacagcttcaactcatgctgcggctcagaaaaaagca
aatcatgcaactcaacctgtagcacaaccttctgctcaaaaagcagcaagcccatgtgca
tggttagaaaacctgtttgttcaaaaacaagcgcaaacagttgatcaatctcgttcagca
caaaatgctgctgctgcgattgagcaaatggtgaatacaggcgcagtaagccgcggacag
ttcggtcaagtagccgtacctgctgttgcggaagttgcgccagttcaatcaaataacgct
tatatttcacagtcacctgtgaaacaagacgttcgtgaacatgttgaaaaagatgataaa
tctcagcaacaacgtcagaacaacaaaaagcgtaaacataaagagcaacgtgaacaacat
caccaatcacatgaacagcaacatcaagttcatgaagaagtggttcaattgtcacgccaa
gaacaacgtgagttaaaacgtcagcaaaaacgtcaacagcagcaagatcagcaacatcaa
aataatgatgtacaacacactgaaaatgctgtgccacgtcgtgaccgtaataatcaacaa
cgtccaaaccgtccaaatcgccaccgcgatccaagtgtattaaatgaaaatcaaaataca
ctggttgttgttgatgaaaaacaaattaaggttgatgtgattgatgcacctaagcatgat
gtcatgaacactgctttaatcatcaatgttgatcaaggtcaaagtgagattgttgcactt
acacctgagcgtcgtcacgttgagcgagttgaaacgacttctactgaagttgctcaagag
ccaactccagctcctgttgtagccgagaaagctgctgtagttgaaaccaaagaagaagct
cagccaagccaagaagctgctcagccacaaatcaaacgtgctagcaatgaccctcgtatg
cgtcgtcgtcagcaacgtgaggctaaacacgctaaggcagctacaccatctattgcgcca
tcgcaaattccaactttggcacaacacacaatcggtagtttaatccgtcatgtgtatggt
gaagattgcaccgtattgattgaacaatttggtctagtcccaacgtttaatcgtgctttg
cagaaatttgcagaacagtacgcaagtacgttagtagttgaagttactgctgaaacggaa
gagaaaaagccggtaactcgtgatgcagaacttccaagccataaaccagctgaagaagca
gaacctgcaccagtacttccgcttactccgccgcaagcaccagctccacgtgttgcaaat
gacccgcgtgagcgccgtcgtttagcaaaacttgctgcggaacaagcatttgagcaagtg
aaacaacaacattctgctcaagaagaagttgctactcctgctcctgtagcagaagaaacc
gttgctgctccaactgctgaaacacaagcaacagttgaaccagcacaacaaccgcttgaa
cttaatcagtcaactgaagtcgtacaacctgaagctgctcctgcagaggaaaaagctaca
gaagaaacagtagctgaagctcctgcggcaaaggaacctgcgccatcaaaagcagcaagc
aaagcaaaagcagcggctgaagaaacagtagctccgactgaagcaacaactgatgccgaa
tcagaagacgttaaggcagataaggacaaaccgagtcgccctcgtcgccctcgtggccgt
ccgccaaaaaaagctaatcctgtagctgagtaa
DBGET
integrated database retrieval system
