KEGG   Trichophyton benhamiae: ARB_00436
Entry
ARB_00436         CDS       T01611                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
abe  Trichophyton benhamiae
Pathway
abe03013  Nucleocytoplasmic transport
abe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:abe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ARB_00436
  09122 Translation
   03013 Nucleocytoplasmic transport
    ARB_00436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abe03019]
    ARB_00436
   03041 Spliceosome [BR:abe03041]
    ARB_00436
Messenger RNA biogenesis [BR:abe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     ARB_00436
Spliceosome [BR:abe03041]
 Complex C
  Other components
   EJC/TREX
    ARB_00436
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    ARB_00436
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd ANAPC4_WD40 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR75_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd WD40_RFWD3 WDR90_beta-prop_4th Cytochrom_D1 Beta-prop_EML Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_WDR19_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_WDR36-Utp21_1st CFAP251_N eIF2A Beta-prop_WDR41 Beta-prop_NOL10_N Tricorn_2nd Beta-prop_DCAF12 PAC11 Beta-prop_ACSF4 Beta-prop_NUP159_NUP214 ASA1 DPPIV_N PALB2_WD40
Other DBs
NCBI-GeneID: 9519205
NCBI-ProteinID: XP_003013251
UniProt: D4AW71
LinkDB
AA seq 331 aa
MPPASSNLVSKDRIRTLAWNPTGTLIATGSVDRTLRIWNPERPDVRYSTDLRGHTSGIEQ
IAFNPVKESELASCSKDGTVRFWDVRAKNCVGRVDVGGEAFSLAWSPDGSVLLAGRMDDT
LVPISVEPVAMSTNPAPNAPKAPSTYKALSHHKQPIRTNGIAFSHSFDPNLFLTTGDGTV
KIESYPSFDTLHTLNAHTAACLCVSLAPTARYLAIGGGDSLISLWDTTNWVCQRTVSSSG
GGAVRGISWSWDGRFIVGACDETDCGGTGLEIFHAETGDSVYTIPTGNPNVGVPAVAWHP
SRYCLAYSLYAEGIGSGNNGLRIVGAGAGDF
NT seq 996 nt   +upstreamnt  +downstreamnt
atgccgccagcttcttctaatctagtatccaaggatcgcattcgtactttggcatggaac
ccaacgggaacgttgatagcaactgggtctgttgatcgaacactgcgcatctggaacccg
gaacgacctgacgtgagatattcgaccgatttgcgcggacacacttccggcattgaacag
atagcattcaaccccgtgaaggaatctgagctcgccagctgctcgaaggatggaactgtc
cgcttttgggacgtgcgcgcaaagaactgcgtcggccgtgtcgatgttggaggggaggcc
ttttccctcgcatggtcccccgatggaagcgtactgctggccgggagaatggatgacaca
ttagttcctatatctgtcgaaccagtagccatgtctaccaatcctgcacccaatgcgcca
aaagcgccatcaacctacaaagcattgtctcaccataaacaacccatccgtacgaatggg
attgcattttcacactctttcgatccaaaccttttcctcaccaccggggatgggactgtc
aaaatcgaatcttacccatccttcgacacactacatacgctcaatgcccatacagccgct
tgtctttgtgtctcgcttgctccaactgcgaggtatctagccattggcggaggagattca
ctcatttccctctgggatacaacgaattgggtatgccagcgcactgtctcgagtagtggt
ggtggagccgttcgcggtattagctggagttgggacggacggtttatagtgggcgcctgt
gacgaaacagactgcggcggcacaggtttggaaatattccatgctgagaccggagatagt
gtgtacactataccgacgggcaatcccaacgttggggtccctgccgtagcctggcatcca
tcccgttattgtcttgcgtattctctctacgcagaaggtattgggagtggcaataacggc
ctacgcattgtaggtgccggtgccggtgacttttga

DBGET integrated database retrieval system