Trichophyton benhamiae: ARB_01604
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Entry
ARB_01604 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
abe
Trichophyton benhamiae
Pathway
abe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARB_01604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_01604
03041 Spliceosome [BR:
abe03041
]
ARB_01604
03009 Ribosome biogenesis [BR:
abe03009
]
ARB_01604
03016 Transfer RNA biogenesis [BR:
abe03016
]
ARB_01604
Enzymes [BR:
abe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ARB_01604
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
ARB_01604
Spliceosome [BR:
abe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
ARB_01604
Complex C
U4/U6.U5 tri-SnRNP related factors
ARB_01604
Ribosome biogenesis [BR:
abe03009
]
Eukaryotic type
Pre-60S particles
Helicases
ARB_01604
Transfer RNA biogenesis [BR:
abe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
ARB_01604
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF6664
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9519583
NCBI-ProteinID:
XP_003012096
UniProt:
D4AZI6
LinkDB
All DBs
AA seq
1018 aa
AA seq
DB search
MDDLFDVFEDKPGLNDATNEPPRPRKARNKKRRANGDIKSENVATANGTESPEPVEPAAD
KSDAAEAEVQDDQPDIKRLRVDQEPEPVVADTFETEQSREVAASAGFQGQQDGKAVVLSH
QVRHQVALPAGYDYIPISQHKPPEKPARVWPFTLDPFQQVSIASIEREESVLVSAHTSAG
KTVVAEYAIAQCLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTATCLV
MTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATI
PNAMQFAEWVTKMHNQPCHVVYTDFRPTPLQHYLFPAGAEGIHLVVDEKGVFREENFQKA
MSSIADRQGADPADAMAKRKGKGKDKKTNKGGDKNGPSDIYKIVKMIMMKNYHPVIVFSF
SKRECEAFALQMSKLAFNDNSEKEMVSKVFNSAIEILSEEDRDLPQIQHILPLLRRGIGV
HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSSRWITS
SEFVQMSGRAGRRGLDDRGLVIMMVDEEMDPPVAKDIVRGEQDKLNSAFHLGYNMILNLL
RVEGISPEFMLERCFYQFQNTASVSGLEKELAELESSRDAMTIEDEGTIREYYDLRQKID
TYNSDMRAVITHPNYCVSFLKPGRLIHIKYQDFDFGWSVVVNCQARKPPKNAPREEYEPR
ESYIVDVLLPVSEDSFLKSKGVQPLPPGVKPANKGEPSKLEVVPVLLNCIHSISMVKIKM
PSNLKPEESRKAVKKQIMQIQQRFPDGLALLDPIENMNITDDEFKRLLRKIEVLESRLIS
NPLHNSPRLPELYDQYAAKVELVKKIKETKKKITEAMSIIQMDELKCRKRVLRRFQFINE
DEVVQLKARVACEISSGDELMLSELLFNGFFNNLTPEQCAAALSVFVFEENAKDTPAITN
EELAKPLRDIQAQARIIAKVSQESKLPVNEDEYVKSFRWELMEVMFEWAKGKSFADIW
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctattcgacgtgttcgaggacaagccaggcttgaacgatgccaccaacgag
ccccccagacctagaaaggccaggaacaagaagcgacgagcaaacggagacatcaagtca
gaaaatgtagcgacagccaacggaacggagtcgccagagccggtcgagcccgctgcggac
aagagtgatgctgcagaagcagaagtccaggatgaccagccggacataaagcgcctgcgg
gttgaccaggagccagagccagtggtggcagatacctttgaaacagaacagtcccgtgaa
gttgccgcgtctgctggatttcagggtcagcaagatgggaaagctgtggtgctatcccat
caagtacgacatcaagttgccctgcctgcgggctacgactacatccccatctcccagcac
aagccgccagagaagcccgcgcgggtgtggccttttaccctcgacccctttcagcaagtc
tcgattgcatctattgagcgggaagagagtgtccttgtctctgcgcatactagtgctgga
aaaactgtggttgccgaatatgctattgctcagtgtttgaagaataaccagagggtgatc
tacacgagcccaatcaaggctctgagtaaccaaaaatacagagaatttgcggctgagttt
ggtgatgttggactgatgaccggtgatgtcaccatcaatcccactgctacttgtcttgtc
atgactactgagattttgcggtctatgttataccgaggctcagagattatgcgtgaggtc
gcctgggttgtttttgacgagattcattacatgcgagataagacccgaggtgtcgtttgg
gaggagaccattatcctacttccagacaaagtcagatatgtgttcctttcggctaccatc
ccgaatgcgatgcagtttgcagagtgggttaccaagatgcacaaccagccatgccacgtt
gtatatacagatttccgtccgaccccccttcaacattatcttttccctgccggagccgag
ggcatccatcttgttgttgatgagaaaggtgtgttccgtgaggagaacttccaaaaggcc
atgagctcgattgcagacaggcaaggagcagaccctgcggatgccatggctaaaaggaaa
gggaaagggaaagacaagaagacaaataaaggaggagacaagaatgggccatctgatatc
tacaaaatcgtcaagatgatcatgatgaaaaactaccatccagttatcgtattcagtttc
agcaaacgagagtgtgaggcttttgctctacagatgagtaaactggcattcaacgataac
tccgaaaaggagatggtctctaaggtttttaacagcgccattgagatcctctcagaagag
gatagggatctaccccagatccaacatatcctaccccttctccggcgcggtattggtgtc
catcactcaggtctcctgcccatcctcaaggaaaccattgaaattctcttccaagaagga
ctaataaaagttctcttcgcgactgaaacattctctattggtcttaacatgcccgcaaag
accgttgttttcacaagcgttcgcaagtttgacggtgtcagctcaagatggataacatcc
tcggaatttgtccaaatgtccggacgtgcaggtcgtcgaggccttgatgaccgtggtctt
gttatcatgatggttgatgaagagatggaccctcctgttgccaaggatattgttcgcgga
gagcaggacaagcttaattcagctttccatctcggttataatatgattctcaatttgctt
cgtgtggaagggatatcacctgagttcatgcttgaacggtgtttctaccagttccaaaat
acagctagtgtttctggtctggaaaaagaactggctgagctcgaaagttctagggatgcg
atgacaattgaagacgaaggcacaatacgagaatattatgaccttcgacagaaaattgat
acctacaactctgatatgagagctgtgataacacatcccaattattgcgtttcgtttctc
aagcctggacgtctaatccacatcaaataccaggactttgatttcggatggtcagtggtg
gtcaactgccaagcgcgaaaaccaccaaagaacgccccgcgtgaagagtacgagcctcgt
gagagctatatagtagacgttctactaccagtttcagaggactctttcctaaaatcaaaa
ggtgttcagcctttgccacctggtgtcaaaccagctaacaagggcgagccttcgaagcta
gaagttgttcccgtcctcctcaactgtatacattcaatttctatggtgaaaatcaaaatg
cccagcaacctaaaaccagaagaaagccgaaaggccgtcaagaagcagattatgcagatc
cagcaacgcttccctgatggcttggcgctccttgaccccattgaaaacatgaacattacg
gatgatgagttcaagagattactaaggaaaatcgaggttctggaatcacgtctaatatct
aacccgctacacaactctcctcggcttccagaattgtacgaccagtatgccgcaaaggtg
gagcttgtcaagaaaatcaaggagactaaaaagaagataaccgaggccatgtcgataatc
cagatggatgagttgaaatgccgtaaacgagtacttcgccggttccagttcatcaacgaa
gatgaagtcgtacagctcaaggctcgagttgcttgtgaaatcagcagtggtgacgaactt
atgctcagtgagctgttgttcaacggtttcttcaataatctcacacctgagcaatgcgcc
gcagcactaagcgtatttgtcttcgaagaaaatgccaaggacacccctgccattaccaat
gaggagctcgccaaaccgctcagagacatccaagcccaggctagaatcattgctaaagtt
tcccaggaatcaaaactgcctgtgaatgaagacgaatacgtgaagagcttccgatgggaa
cttatggaggtgatgttcgagtgggcaaagggcaaatcctttgcagatatctggtaa
DBGET
integrated database retrieval system
