Trichophyton benhamiae: ARB_01808
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Entry
ARB_01808 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
abe
Trichophyton benhamiae
Pathway
abe03013
Nucleocytoplasmic transport
abe03015
mRNA surveillance pathway
abe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ARB_01808
09122 Translation
03013 Nucleocytoplasmic transport
ARB_01808
03015 mRNA surveillance pathway
ARB_01808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_01808
03041 Spliceosome [BR:
abe03041
]
ARB_01808
Enzymes [BR:
abe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ARB_01808
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
ARB_01808
Spliceosome [BR:
abe03041
]
Complex C
Other components
EJC/TREX
ARB_01808
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
ARB_01808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ned1_M
Motif
Other DBs
NCBI-GeneID:
9519539
NCBI-ProteinID:
XP_003012052
UniProt:
D4B037
LinkDB
All DBs
AA seq
620 aa
AA seq
DB search
MILRGVPKRQRPFSTFALSTSNETSAFCSITIIINNHLERALSNTRTAHTHRVAHISLGE
ALSIIISPLLTQKSPESHTMATEEDLIDYSDEELQTTDAAAAPAAPAANGDASKKGDLTV
GGAGADKKGSYVGIHSTGFRDFYLKAELLRAITDCGFEHPSEAIHEDTLFSRRKENYLWK
HISFRAKDTGLCASFCGVRPQSRIELMPLLPLLVFLGLYWRKGNVTLTRRETSKHGNLVF
IEMFSTLKIPPRAALQISLYVAFQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLE
PVPGTCSILVMCPTRELAYQIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHP
NIIVGTPGRLNALLRDKKLSLRNIKSFVLDECDKMLDQKDMRADVQEIFRSTPADKQVMM
FSATLAQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLE
FNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIKRYREFKEFNKRICVATDV
FGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGLSISFVSDEENMQVLKDIEKR
FEVALPEYPEEGVDASTYMA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgattctccgaggagtcccaaagaggcaacgcccattttcaactttcgcgctttcaact
tccaacgaaacttcagctttttgttctatcaccatcatcatcaacaaccaccttgaaagg
gccctctcgaatacaagaacagctcacactcatcgagtagcccatatatctctgggagaa
gccttgtccattatcatctcccccctcttgactcagaaatcaccagaatctcacaccatg
gccaccgaagaagatcttatcgactactccgatgaggaactccagaccactgatgctgcc
gctgcgccagctgcgccagctgccaacggtgatgcgtctaagaagggcgatctgactgta
ggcggagcgggcgccgacaagaagggcagttatgtcggtatccattcgaccggtttccgt
gatttctacctcaaggcagaacttctacgcgcgatcaccgattgcggcttcgaacatcca
tcggaggcaatccatgaggacacattattttcaagaagaaaagaaaattatctgtggaaa
cacatttcttttcgcgcaaaggatacaggcctctgtgcctcattttgcggcgttcgaccc
cagagtaggatcgaactaatgccacttttgccgcttctggtcttcctaggcctttactgg
cgcaaggggaacgtaacattgacccgtcgcgaaaccagcaagcatgggaaccttgtattc
atcgagatgttctctaccctgaagatacctcctcgtgccgccctgcagataagcctatat
gttgcattccagcaagtctgcatcccaacagctatccttaatgtcgacgttctctgtcaa
gccaagtctggtctcggaaagacagctgtttttgccttgaccactctccaccagcttgag
ccagttcctggaacttgctctatcctggtcatgtgccctactcgagagttggcttatcaa
atcaaggacgaatatgccagattcagcaaatacatgccagacgtgaagactgcagtgttt
tatggaggcaccccgatccagaaggacattgaaatcctttcttccaaggatacccatccc
aacatcattgttggtactccaggccgattgaatgcccttttgcgggacaagaagctatcc
ctccgcaatatcaaatcatttgtcttggacgagtgtgacaaaatgctcgaccagaaggac
atgcgcgctgatgttcaagagattttccgctctactcctgctgataagcaggtgatgatg
ttcagtgccactcttgcccaggagatccgtcctatttgcaagaagttcatgcgaaaccct
ctcgaggtgtatgttgatgatgataccaaactcactttgcatggtcttcaacaatactac
atcaaactcagtgaagcagagaagaaccgcaagctcaatgagctccttgacaaccttgag
ttcaaccaagtcatcatcttcgttaagagtaccgtccgtgcgacagagcttgacaagctc
ctgagggagtgtaacttcccaagtattgctgttcactccggtgtttcccaggaagagcgc
attaaacgataccgcgagttcaaagagttcaacaagcgtatttgcgtggcaactgacgtt
ttcggtcgtggtatcgacattgagcgaatcaacttggccatcaattacgacatgccaatt
gacgccgactcgtaccttcacagagtgggccgtgctggccgattcggtaccaagggcctg
tccatctccttcgtcagtgacgaagagaacatgcaggtactgaaggatattgagaagcgc
ttcgaggtcgcacttccggaatatcctgaggaaggcgtcgatgccagtacctacatggca
tag
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integrated database retrieval system
