Trichophyton benhamiae: ARB_03295
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Entry
ARB_03295 CDS
T01611
Name
(RefSeq) CAF1 family ribonuclease, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
abe
Trichophyton benhamiae
Pathway
abe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARB_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_03295
Enzymes [BR:
abe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
ARB_03295
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
ARB_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
HDA2-3
Motif
Other DBs
NCBI-GeneID:
9524706
NCBI-ProteinID:
XP_003010594
UniProt:
D4B4A6
LinkDB
All DBs
AA seq
573 aa
AA seq
DB search
MEVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASTYVDGDLSLQKRYEEVK
QAAEEYQILQVGLTLVVEDSQNGWRYPFYTLASSFSLALAFLMSHGFRVESIFTDGVPYI
SMKEEQDAMDRAHKDKDKLSRSLINLNTLAPGHAQFIRQVRHSIREWIEKPAPKDAYLNI
PKPAGMTAAYKLPLELDNYQKRLVHQIVQSEYPGYVSIGKKSFIQILPYDKMRENVFLQK
KLQRTRCNIASQKGFSWVIEALMGSDLSKLDLRLLWRPDGMFTAAEGSKLTKESEALREK
LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR
DASSALSTLMENLGSRVVPKFGILFHSMHLLLPSSRNLTFCANGIETHPDHSSYTVSTPI
HEAGYDSLMTAQIFLKLAVQLYETSSSREALVSRANGDATEIDLMDLSTEPDEQGKTENT
TQQKLVYGHATKFDLLLDMDDEESGASSVGPSEQDSLLEQKVIEGKLLPRLDDDFWSKYI
NKLRVFGTTEENINFERGESSLSRIFGGCFCAF
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacgaggaataacttctcccggcttctgccacggatgctgcaggacatagga
gactgttccttcgttgccctcgacttcgaattctcagggattttcaaccagaagctacgg
cctgcttcgacctatgttgacggtgacctgagcctgcagaagcggtacgaagaagtaaag
caggctgcagaggagtatcagatcctccaggttggccttacactggtggttgaggatagt
caaaatggttggagatatcccttctataccttggcatcgtcgttttctttagctctggcc
ttcctgatgagccatgggtttcgggtagagtcaatatttacagatggggttccctatatc
tcgatgaaagaggaacaggatgcaatggaccgagcgcataaagacaaggacaagttgtcg
agatccctgatcaatctcaatacattggctccgggccatgcacaattcattcgacaagtc
cggcatagtatcagggagtggatcgagaagcccgccccaaaagatgcctatctgaatata
ccaaagcccgctggtatgaccgcggcttacaaactcccactggaactggacaactaccag
aagcggctcgtgcaccagatcgttcaaagtgagtacccaggctatgtgagcataggcaag
aaatctttcattcagatactcccctatgacaagatgcgggagaatgtttttctccaaaag
aagctccagcgcactcgttgcaacatagctagccagaagggcttcagctgggtcatcgaa
gctttgatggggagcgatctttcaaagctcgacttgagactcctctggaggcctgatggc
atgttcaccgcagccgagggaagtaaactcacaaaggaaagtgaggctctccgggaaaag
ctgaggtcagggcctcctgttttagttggacataatctgttcacagaccttgtcaacttt
tacaaatgtttcattggcgacctgcccagtcgtgtggaggatttccagcaagcaatcaat
gagctgttccctttggtcattgatacgaagtacatggcaactactgggggggtattacga
gacgcatcctcagccctgtcaacactcatggaaaacctgggttcaagggtggtgcctaaa
tttggtattttgtttcactcaatgcacctgcttcttccttcttctcggaatctaacgttt
tgtgcaaatggtatagaaacccacccagatcactcctcgtacaccgtcagtaccccaata
cacgaagcggggtatgacagccttatgacagcccagattttcctcaagctcgcagtgcaa
ctctatgaaacaagcagttcgcgagaggcacttgtcagtcgagccaatggggacgctacc
gagattgacctgatggatttatcgaccgagccagatgagcaagggaagacagaaaacacg
acgcaacaaaagctcgtgtatggccatgcaaccaaatttgacctcctgttggacatggat
gatgaagaaagcggcgctagctctgtgggcccttccgagcaagacagtcttcttgagcag
aaagtaatcgaaggaaagcttctaccacggcttgatgatgacttttggagcaagtacata
aacaagctcagggtctttggaacaactgaggaaaacatcaactttgaacgtggagaatcc
tccctaagccgaatttttggtggttgcttctgtgccttttaa
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