Trichophyton benhamiae: ARB_03894
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Entry
ARB_03894 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
abe
Trichophyton benhamiae
Pathway
abe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ARB_03894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abe03041
]
ARB_03894
Enzymes [BR:
abe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ARB_03894
Spliceosome [BR:
abe03041
]
Complex C
Other components
Step II factors
ARB_03894
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
AAA_16
T2SSE
AAA_19
nSTAND3
Cas3-like_C_2
TsaE
ATPase
Motif
Other DBs
NCBI-GeneID:
9525313
NCBI-ProteinID:
XP_003009968
UniProt:
D4B5Y7
LinkDB
All DBs
AA seq
1214 aa
AA seq
DB search
MDDLESLELLSLVSRVTTELQNHLGVNEKTLAEFVIDQHLKCKSLDEFKSSLKAVGADFP
QSLVESVDRLVLTMHPKYKSKRTKPDEQEKQHIGQDGVDDIEKKARVFKGLAVPDDKAPH
WEEDEPEPERNTNAEAMDDTFAMLEGLAGKARAEQNGYSSSRKRSRSPEIDDYDRNRPRR
GRYRSRSRSRSGSPDRDRHGSRHSHRSRKYPDEPRERGRSGRNYNYDDDFKKPPASELDD
RPILFKIYDGRVTGIKDFGVFVNLQGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVK
VKVVSIQDSRIGLSMKEVDQVSGHDLAPQRRIASGANMERLDGTGADDRYGNLGSSVPVI
ERDSGTKRSKKRLNSPERWEIKQLIASGAVSAADYPDLDEEYHATLRGEGDFEEEEDIDI
EVREEEPPFLAGQTKQSLELSPIRVVRAPDGSLNRAAMAGANLAKERREIRQQEAQDKAA
EKAAQVDLNAQWQDPMVAPEQRKFASELRTATTEKSSEPLPEWKRAAQNKDVSYGKRTNL
SMKEQRESLPVFKFRKQLLEAVRENQLLIVVGDTGSGKTTQVTQYLAEGGFANNGMIGCT
QPRRVAAVSVAKRVSEEVGCQLGQEVGYTIRFEDCSSPNTKIKYMTDGILQREILLDPDL
KKYSAIMLDEAHERTIATDILFGLLKKTIKRRPDLKLIVTSATLDADKFSEYFNGCPIFS
IPGRTYPVEIMYSKEPESDYLDAALVTVMQIHLTEPPGDILLFLTGKEEIDTSAEILYER
MKALGPNVPELVILPVYSALPSEMQSRIFEPAPPGGRKVVIATNIAETSITIDQIYYVID
PGFVKQNAYDPKLGMDSLVITPISQAQAKQRAGRAGRTGPGKCFRLYTEAAYQSEMLPTS
IPDIQRQNLTQTILMLKAMGINDLLHFDFMDPPPTNTMLTALEELYALSALDDEGLLTRL
GRKMADFPMDPGLAKVLIASVDMGCSDEVLTIVAMLSVAQGIFYRPKEKQQQADQKKAKF
HDPHGDHLTLLNVYNAWKQSRFSTPWCFENFIQARQIRRAQDVRQQLVTIMDRYHHKIVS
CGRDTTRVRQAFCSGFFRNAARKDPQEGYKTLIEGTPVYMHPSSALFGKAAEHVIFDTLV
LTTKEYMQCATTIEPKWLVEAAPTFYKQASTNKLSKRKRAERIQPLHNKFAGEDDWRLSA
QRRQGRGGGGGTWG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccttgagtctctcgagctcttgtcactcgtttcgagggtaacgactgaacta
caaaatcatttaggagtcaacgaaaagacgctcgcggagttcgtgatcgaccagcatcta
aaatgcaagtctctcgacgaattcaagagctcgctcaaggctgttggagcggattttcct
cagagcttggtggaaagtgtggaccgcctagtcctaacaatgcatcctaaatataagtcg
aagcgaaccaaaccggatgaacaggaaaagcaacatattggacaagatggagttgatgac
atcgaaaagaaagcaagggtcttcaaagggcttgcggtcccagatgataaagctccccac
tgggaggaagatgagcctgagccggagcggaatacaaatgcagaggctatggatgacacg
ttcgcgatgctagaaggtttggctggcaaagctagagcagaacaaaatggttactcaagc
agtcgaaagcggagcagaagccctgaaattgacgattatgatagaaatcggcctcgccgt
gggaggtacaggtctagatccaggtcccggtctggatcacccgatagagatcggcatgga
agtaggcattctcacaggagccgcaaataccccgatgagcctagggagcgaggacgatct
gggcgcaattacaattatgatgatgattttaagaaaccacccgcatcagaactagatgat
cggcctattctcttcaaaatttatgatgggagagtgacgggtatcaaggacttcggtgta
tttgtgaatttgcaaggggtcagggggagagttgatggcttggttcatgtatctgcgatg
caagagggagcaagagtaaatcacccatctgatcttgtgtctcgcggacagcaagtcaag
gtcaaggttgtttctatccaggattcaaggatcggattatcgatgaaagaagttgaccag
gtttccggccacgacctggcaccccagaggcgaattgcgtcaggagcaaatatggaaaga
ttagatggaactggcgcagatgatcgatatggaaacctagggtccagcgtacccgttatc
gagcgggattccggtactaaaagaagcaagaaaagactaaactctccagagagatgggaa
attaaacagcttattgcctctggtgccgtgtctgctgcagactaccctgatttggatgag
gaatatcacgctacgctaagaggagagggagatttcgaagaagaggaggatattgatatt
gaggtgcgtgaggaagagcctccatttttggcgggtcaaaccaaacagtccttggaactt
tctccaattcgtgttgttcgagcaccggatggttcacttaaccgtgctgccatggctggc
gcaaatctcgcaaaggaaaggagagagattagacaacaagaagcccaagacaaggctgcg
gaaaaggcggctcaagtcgatcttaacgcacaatggcaggatccgatggttgcgccagag
cagaggaaattcgcgtcagagttacgcactgctaccactgaaaagtcatcagagcctttg
ccagagtggaaacgagcagcgcagaataaagatgtgtcatacggaaaaaggacaaatctt
tctatgaaagaacaacgcgaaagtcttcctgtgttcaaattccgcaaacaactactcgaa
gctgttcgggaaaatcagttacttatcgttgtcggcgacacggggtctggaaagacgacg
caggtcacccaatacctagcagagggaggatttgcaaataatggcatgattggatgcacg
caacctcggcgagtagccgcagtgtccgttgccaagcgagtatctgaagaagttggctgc
cagctgggccaggaagttggttatactatacgttttgaggattgctctagtcctaatact
aaaatcaagtacatgactgacggaattcttcaaagagaaatccttttggacccagacctg
aagaaatactctgccataatgcttgacgaggcccatgagagaactattgccactgacata
ctttttgggttgctcaagaaaactatcaagagacggcctgatcttaagctcattgtgaca
tcggctaccctcgatgcagacaaattctcggaatacttcaatggctgtcctatcttttct
ataccaggaaggacatatcccgtggaaataatgtactccaaggagcctgagtcagactac
ttggatgccgccttagttacagtgatgcaaattcatctcaccgaaccacccggggatatc
cttttgtttttaactggtaaggaggagattgacactagcgcagagatcttatatgagaga
atgaaagcgttaggtcccaacgtacccgaacttgttattcttcctgtttattccgctctt
ccaagcgaaatgcaaagcaggattttcgagccagcccctcccgggggaagaaaggttgtt
attgcaactaatatcgcggaaacgtcgattacaatagatcaaatatactacgttatcgat
cctgggtttgtcaaacaaaatgcctatgatccaaagctgggaatggactcgttagtgatc
acaccaatttcacaagctcaagccaaacaacgagctggtcgtgctggaagaacagggcct
ggtaaatgttttcgattatataccgaagctgcatatcaatctgagatgttgccgacatca
attccggatattcagcgtcaaaatcttacccaaactattcttatgctcaaagcaatggga
attaatgacctcctgcatttcgacttcatggaccctccccctaccaacaccatgctcact
gctcttgaggagttatatgcactctctgctcttgacgatgaggggcttttaactcgcctc
ggtcggaagatggctgatttccccatggatcccggcctggccaaggtccttattgcctcc
gtggatatgggttgctccgatgaagtcttgactattgttgctatgctctccgtggctcaa
ggtatcttctatcgacctaaagaaaaacaacagcaggcagatcagaagaaagctaaattt
catgaccctcatggcgaccaccttaccttgctaaatgtgtataacgcatggaaacagtca
cgattcagtaccccttggtgttttgaaaactttattcaagcgcgacaaatccgtcgagcc
caggatgtccgccaacaattggttaccattatggatcgataccaccataaaatcgtatcc
tgtggtagggatactacgagggttcgccaggcattttgttcaggctttttcagaaatgct
gctagaaaagatccacaggaaggatataagactttgattgaaggcaccccagtttacatg
caccctagctcagcactcttcgggaaagctgctgagcatgtcattttcgatacccttgtc
ctcacaacaaaagagtacatgcagtgtgccacgacaatagagccaaagtggcttgttgag
gcagcaccaacgttctacaagcaagcgagtaccaacaaattatcaaagaggaaaagagcg
gaacgcattcagccattacataacaaatttgcaggcgaagatgactggcgactatcagct
caaagacgacaaggtcgtggtggtggtgggggaacctggggatga
DBGET
integrated database retrieval system
