Trichophyton benhamiae: ARB_04228
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Entry
ARB_04228 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
abe
Trichophyton benhamiae
Pathway
abe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
ARB_04228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abe03021
]
ARB_04228
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_04228
Transcription machinery [BR:
abe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
ARB_04228
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
ARB_04228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
VHS
Zn_ribbon_ISL3
DUF7340
Motif
Other DBs
NCBI-GeneID:
9524457
NCBI-ProteinID:
XP_003017348
UniProt:
D4AIY0
LinkDB
All DBs
AA seq
628 aa
AA seq
DB search
MSGLVSDEVAEDYKNSLEDLTSNDKFQISNLTVIAKENTEHAMAISRVLENHIRNTPPSQ
KLPALYVVDSVVKNVGTPYTLFLGRNLYQTFMNAYTLVDSQTRKKLDEMLKTWKEPVPGS
LDPRPVFPAEITRNIENALIKARTAALQQQQSRSQQEAMSLGRGIGTPPPIWRNTPTPPQ
GGPRYPPGYGYNNQQMPSNGHGYPNQPLYNQPPQEQINLASLHRDVDSLIMSVRLEFTAN
PLNTAVQQKLKALLDLQNILQQQRLPDAQLKQIRDQVSQLSASSAKPTPPPPAPAALPAH
IPHPPVSTPPIGTVPAQTPQPNLQALLNPNTLAELIKATAQKPTPTQQTQPYTQPAAPTP
SLAAAVQPPVSLAESPLIASLRARGLLPPATGTPTTTPPNLPFIIPGQPPYTPVPANTNS
QGVKIKVPMTSASIRIPRPNLISCLYEDKPNRCGTCGRRFVSTQEGKDKKARHLDWHFKT
NLRINEAAKRSQNRSWYLDERDWIKFREFEDDIGADDASVAARKSNNEDASGKKAEQQRW
IHAPNDATLRNTPCPICQENFESTWFEEAQDWIWRDAIKVGNRIYHASCYAEVTKDGSTG
ANADISRGRTSTPDSVLGKRKAEVSIFS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcctcgtttctgacgaagttgcggaggactataagaactccctggaagacctc
acatcgaatgacaagttccaaataagcaatctgaccgttattgcaaaggagaacactgaa
catgccatggccatctcccgagtgctggagaatcacatacgaaacacaccaccatctcaa
aagttaccagctctctatgtagtggactcagttgtgaagaatgtagggactccttacacg
ctgttcctgggccgcaacttatatcaaacattcatgaacgcctatactctcgttgactcg
cagactcgcaagaagttagacgagatgcttaagacatggaaagaacctgtccctggttct
ttggatcccaggcctgtcttcccagctgagattactcggaatatcgagaatgctctgatc
aaagctaggacagcagcccttcagcaacaacagtccagaagccaacaggaagccatgagc
ctcggtaggggtataggtacaccgccgccaatatggagaaatacccctacaccaccccag
ggtggccccagataccctcccggatacggttataataaccaacaaatgccgagtaacggc
catggatatcccaatcaaccactatataaccaaccaccacaggaacaaatcaacctagcc
tccttacatcgtgacgttgactcgttgataatgagtgtacggctcgagttcactgctaac
ccacttaacaccgcagttcagcaaaagctcaaggcccttttagatttacagaacattcta
caacagcaacggttacctgatgcacagctaaaacagatccgtgaccaggtgtctcagctt
tctgcctccagcgcaaagccaacaccaccgccccctgcacctgctgctttgcctgctcat
atcccacatcccccggtctctacacctcctatagggacagtacctgcccagacaccgcaa
ccaaacctccaagctttactgaacccaaacactcttgcagaacttatcaaggcgaccgca
cagaagcctactccaacccagcaaactcaaccatatacccaaccggctgctcctactcca
tcacttgcagcagctgtacaaccgcctgtatccctagccgaaagtcccttgatagcgtca
ttgagagctcgtggccttctacctcctgctacgggaactcctacaaccacaccacctaat
ctccccttcatcattccaggtcaaccaccttatactccagtgcctgccaacacaaattct
caaggtgttaagattaaagttccaatgacctctgcttcgatacgaatacctcgcccaaat
ttgatttcctgcttgtacgaagataaaccgaaccgctgcggaacttgcggtcgccgattc
gtctcaacccaggaagggaaggacaagaaggctagacatctagactggcacttcaaaaca
aatctacggataaacgaggctgccaagagaagtcagaacagaagctggtatctcgacgag
cgcgactggataaaattcagagaatttgaagatgacattggtgccgacgatgcgtctgtc
gctgctagaaaatccaataacgaagatgcatcaggtaaaaaggcagaacagcaaagatgg
atccacgctcctaatgatgccacgcttcgcaacactccctgcccaatatgtcaggagaac
tttgagtccacttggtttgaagaagcgcaagattggatatggagagatgctattaaagtt
ggaaatcgcatatatcacgccagttgctatgcagaggtcacaaaagatggcagcacaggt
gcaaatgccgatatatcgcggggccgaaccagtacgccggattccgttctcggcaaacga
aaagcagaggtgagcatattctcttaa
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integrated database retrieval system
