Trichophyton benhamiae: ARB_05117
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Entry
ARB_05117 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
abe
Trichophyton benhamiae
Pathway
abe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARB_05117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_05117
Enzymes [BR:
abe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ARB_05117
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
ARB_05117
mRNA degradation factors
3'-5' decay
Ski complex
ARB_05117
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
9526301
NCBI-ProteinID:
XP_003016824
UniProt:
D4ALC0
LinkDB
All DBs
AA seq
1292 aa
AA seq
DB search
MTDGLEAAMQQLKIKMDAIDPDGDLDAWAKDDAVEKPRSRRIQPAEELKAELEREFLIPS
PRFNTHWLNKLQRRWDYPTDYSKLFELAPTQSRTIIRFNREGLEGKVTGYHEVTVPAGSA
TAKNSTSLRRKPASRADFVRGAAGFYPFAPGGLEAVDDISAIDAEAELDEGQTLESPPKK
SSGLDRVINFGSEGGLLEIPPGFTRGLKFKIEEAKDAQEGVEEVRKALEGEDETELKHLP
SQESGDTARKPGVEEGGEDSTSEDEEDIDALLPVEYPALEPRGQLIQSSLKKSRKEWAHV
VDVNKEITNFYELVPDMAREYPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAI
ALANKHMTKAIYTSPIKALSNQKFRDFRGTFDDVGILTGDIQINPEASCLIMTTEILRSM
LYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVSLILLSATVPNTYEFASW
VGRTKKKDIYVISTPKRPVPLEHYLWAGKEIYKIVDSEKRFIEKGWKDADDILSGRDKVK
AQKAAEAQAARSGHQSERGRGQGQRGSGQRGTGQRGGPQQRGRGQPSARGIGNIARTGRG
GGRTSAAQDRNVWVHLVQYLRKREMLPACIFVFSKKRCGENADSLSNQDFCTAADKSAIH
MVVEKSLTRLRIEDRDLPQIRKVRELLSRGVGVHHGGLLPIVKEIVEILFAKGLVKILFA
TETFAMGLNLPTRTVVFSGYRKHDGRGFRDLLAGEYTQMAGRAGRRGLDTVGSVIIVTSG
RDEAPPITTLRKMILGDPTKLRSQFRLTYNMMLNLLRVEALKIEEMIKRSFSENATQALL
PEHEKQVQLSEASLEKIKREPCAVCDVDLAACHQASVEYERLTVQLHTLLLASPVGKRMY
AAKQLVVFKKNGVRTAGVLMKEGVTGGPIPSLNVFEIGPVESRRFPSDILPYMPVFREYF
HPLPTSPENMVLKSCKVPIANLECVTGTTVRVGGPTWCLNIHKEALKVADKEFSKLCASW
TDKSWDELDWERVKDMSVREVLEQRAQQVKIARSCACLQCPQFLKHFEMQHDEWQVKENI
SQLKLLMSDQNLQLLPDYEQRIQVLKDLGFVDEASRVQLKGKVACEIHSADELVLTELIL
ENVLAEYEPEEIVALLSAFVFQEKTENEPNLTPRLEAGKEAIIAISDRVNDLQIKHQVVL
SSDDANDFASKPRFNLMEVVYEWARGMTFNRITDLTDVMEGTIVRVISRLDETCREVKNA
AKLVGDPSLYNKMQLAQEMIKRDVIFAASLYL
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgacggacggtctagaggctgctatgcagcaactcaagataaagatggatgctatagat
ccagatggagaccttgatgcatgggctaaagatgatgcagtagagaagccgcgtagccgc
aggatccaaccggcagaggagctgaaagctgagctggagagagagtttctgataccgtct
ccgcgcttcaacactcactggctgaacaaacttcagaggcgatgggactatccaacagac
tactcgaagctctttgagcttgcaccgacccagagtcggaccatcatcaggttcaaccgt
gaaggcttagaaggtaaagtcaccggctaccatgaagtcactgttccagccggaagtgct
acggcgaagaactctacttctctacgaagaaaaccagcgagtcgtgcagatttcgtcaga
ggagctgcaggattctacccatttgcaccaggtggccttgaagcagttgatgacatttca
gccattgatgcagaggcggagctggatgaaggccagactctggaaagtccaccgaagaaa
tcatcaggtcttgacagagttatcaatttcggttctgaaggtggtttactagagataccc
cctggattcacccgtgggctcaagtttaaaatcgaagaggccaaagatgcccaagaagga
gtagaagaagtccgcaaagcacttgaaggtgaagatgaaactgaacttaagcatctaccg
agccaggaatctggagatactgccagaaaaccaggcgttgaagaaggtggcgaagactca
actagtgaggatgaagaggatatcgatgcacttctacctgtggaataccctgctttggag
cctaggggacaactcatccagtcttctttgaaaaagtctcgcaaagagtgggctcatgtc
gtggatgtgaataaggagataaccaatttctacgagcttgttcccgatatggcccgggaa
tatccattcgaactggatacttttcaaaaggaagcagtgtatcatttggagaatggagat
tccgtatttgtcgctgctcacacttctgccggaaagacagtagttgcagaatatgcaatc
gctctagcaaataagcatatgactaaagcgatttatacatctccaataaaggccttgagt
aaccagaaattccgcgatttcagaggtacatttgatgatgttggaatcttaaccggagat
atacagattaatccagaggcaagctgcctgattatgacaacggagattcttcgaagtatg
ctttatcgaggcgccgatttgatacgtgacgtggagtttgtcatattcgacgaagtccat
tatgttaatgacttggaaagaggggttgtatgggaagaggtcatcatcatgctgccggag
cacgttagcctcatcctcctatctgccacggtacctaacacctacgagtttgcttcgtgg
gtgggacggacaaagaagaaagatatttatgttatctcaacgccaaaacgaccagtacca
ctggaacattatctctgggctggaaaggaaatatacaaaatagttgattcggagaaacgg
ttcattgaaaaaggctggaaagatgccgatgatatactctcaggacgtgataaagtcaaa
gctcagaaagcagcagaggctcaggcagctcggagtgggcatcagtcggagaggggacgt
ggccagggtcagcgtggaagtggtcaacgcggtacagggcaacggggtggccctcaacaa
agaggcagagggcagccatcagctcggggaattggcaatattgcaaggacaggacgtggc
ggtggcaggacctctgctgcacaggaccgtaatgtatgggtacatttggtgcaatatctc
cgaaaacgcgaaatgcttccggcgtgcattttcgtcttttctaagaaacgatgcggagag
aatgcggattctctttctaatcaggacttctgcactgctgcagataagagtgcaatccac
atggtcgtggaaaaatcgttgactcgtctccggattgaagatcgagatctcccacagatc
cgtaaggttcgtgaactgcttagtcgaggtgttggcgtccatcatggtggccttcttcct
atcgttaaggaaattgtcgaaatattgtttgcaaaaggacttgtaaagatcctatttgca
acagagacctttgcaatgggtctaaatttgcctactcgcacagttgtcttctctggatac
cggaagcacgacggaaggggcttccgagacctcctagctggagaatatacccaaatggct
ggtagggctggtcgtcgtggtcttgacacagttggatcggttattattgtcacatccggc
cgtgacgaagccccgcctatcacgacactgaggaagatgatactcggtgacccgacgaag
ctacgatctcaattcagactcacgtataacatgatgctgaatcttttacgtgtcgaagcg
ttgaagatcgaggagatgattaagcgaagttttagcgaaaatgctacgcaggcacttctc
cctgaacatgagaaacaagtgcagctgtctgaagccagtttggaaaagataaagcgagag
ccttgtgcagtctgtgatgttgaccttgcggcctgccaccaggcaagcgttgagtatgaa
cgtctaacagttcagctgcatacactgctcctggcttctcctgttggcaaacgtatgtac
gccgcaaaacagctggttgtattcaaaaagaatggagtcaggacggctggagtactgatg
aaggagggagtcaccggtggacctataccatccttgaacgttttcgagatcggcccagtt
gaatctcgaagatttcccagtgatatacttccgtacatgcccgttttcagggagtacttc
cacccgctgcccacatcgcctgagaacatggttctaaagagttgcaaagtaccgatcgcc
aatctcgagtgtgtgacaggtacaacggtgcgggttggcggcccaacttggtgtctcaat
atccataaagaggcattgaaagtggcagataaggaattttcaaaactttgcgcatcgtgg
acagacaaatcctgggatgagcttgactgggaacgagtcaaggacatgtctgtcagggaa
gtgctggagcaaagggctcaacaagttaagattgcgaggtcctgtgcatgccttcaatgc
ccacagttcctcaaacattttgagatgcaacatgacgaatggcaggtgaaggaaaatatc
tcgcagctgaaactgctaatgtcagatcaaaacctccagctcctgcctgattatgaacaa
cgaatccaagtgttaaaagacctgggcttcgtcgacgaagccagccgagttcaactcaag
ggaaaggtcgcctgcgagatccactcagcggatgaactggtactcaccgagctgatactt
gagaacgtgttggcggagtacgagccagaggaaatcgtagccctcctctccgcgtttgtc
ttccaggagaagacagagaacgaaccaaacctgacaccccgtctggaggccggcaaggaa
gctatcatagcaatatccgaccgggtgaacgacctgcagatcaagcatcaggtcgtgctc
tcatccgacgacgctaacgactttgcgagcaaaccacggttcaacctgatggaagttgtg
tacgagtgggcacgagggatgacgttcaaccgcatcacggacctcacggacgtcatggag
ggcactatcgtgcgggtaattagtcgattggatgaaacttgccgcgaggtcaagaacgct
gccaagcttgttggagatccatccctgtacaacaagatgcagctggcgcaggagatgatc
aagcgagatgtgatctttgcagcttcactctacctctag
DBGET
integrated database retrieval system
