Trichophyton benhamiae: ARB_05228
Help
Entry
ARB_05228 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
abe
Trichophyton benhamiae
Pathway
abe03008
Ribosome biogenesis in eukaryotes
abe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
ARB_05228
09123 Folding, sorting and degradation
03018 RNA degradation
ARB_05228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abe03021
]
ARB_05228
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_05228
03009 Ribosome biogenesis [BR:
abe03009
]
ARB_05228
03016 Transfer RNA biogenesis [BR:
abe03016
]
ARB_05228
Transcription machinery [BR:
abe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
ARB_05228
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
ARB_05228
Ribosome biogenesis [BR:
abe03009
]
Eukaryotic type
Pre-60S particles
RNases
ARB_05228
Transfer RNA biogenesis [BR:
abe03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
ARB_05228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF7794
Myc_N
Motif
Other DBs
NCBI-GeneID:
9526574
NCBI-ProteinID:
XP_003016934
UniProt:
D4ALN0
LinkDB
All DBs
AA seq
1038 aa
AA seq
DB search
MGVPALFRWLSSKYPKIVSAVVEEQPQEIDGQEIPVDITKPNPNGEEMDNLYLDMNGIVH
PCTHPEGKPPPANEGEMMLEIFKYTDRVVNMVRPRKVLMIAVDGVAPRAKMNQQRSRRFR
SAQDAKAEDEKKVEFAKLLKKQKRGKKDVTITEEVITKTWDTNVITPGTPFMDILALALR
YWVAYKLSTDPGWEKLKVIISDATVPGEGEHKIMEFIRSQRACPEYDPNTRHVIYGLDAD
LIMLGLGTHEPHFRVLREDVFFQESKARTCKLCGQAGHVEEACTGKAKEKRGEFDEKQKG
NPLKPFIWLHVSVLREYLAVEMQVPQQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLEI
RENGIDTLIAIWRDNIPQMGGYLTKDGRVDLAKAQLILQGLAKQEDAIFRRRRQTEERRN
ANAKRRQEEDRQRRNNNNDHARKKRRGSRGAEPVPDIPPLVVPGKGELSRAERELTHAMV
VNRGAVYKANMANKSAAAALKAQLLSGGTAEDGVDTTNAQDSAPSGIPGSKLGKRKSDVF
ENSNTEAEAEEEDEEEEDTVEVPAKPKEDEMPPDTVRLWEDGYADRYYEQKFGVSPKDIA
FRHKVARAYVEGLSWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGEMDVQFTKGTPFKP
FEQLMGVLPAASNHAIPEVFRDLMSDENSEIIDFYPEDFPVDLNGKKFAWQGVALLPFID
EKRLLAAMGKRYHLLSEEEQARNAMGKDVLLLSEKHPLYESLTANFYSKKQVSSKLKLNM
RISEGLGGKVEKNESYLPHSSLSLEVDGADIPALDEDRSISVYYEMPRSMHTHKSMLLRG
VKFKEPALDKADLEITRNKARHSGRSFGGAPLHSSRGGRGRGGGRGGGQISYASNDRPNP
FAAHVAPGYIPPPHMGGGPPGYNPAPPNMYNGPDRYRSQGGYPRGGGGGGGGGYGGGYGG
HYQQPPPHSWAQHDGPAYNHPPRNAYQDRAHYQRGGSSGYGRGGGGGGGSYDGRGGGGYY
GSRGSGRGRGRGDGYGRY
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagccctcttccgatggctttcgtccaagtacccaaagattgtttccgcc
gtcgttgaagaacagccgcaggagatagacgggcaggaaataccagtcgatatcaccaaa
ccgaacccaaatggcgaggagatggataacctgtatctggacatgaatggtatcgtccac
ccatgtacgcatcccgagggcaaacctccaccggcaaacgagggcgagatgatgctggaa
atcttcaaatatacagacagggtggtgaacatggtccggccaagaaaggtgctaatgatt
gctgttgatggcgtcgctccgcgtgcaaaaatgaaccagcaacgctcccgtcgattccgt
tctgcgcaagatgcaaaggctgaagatgaaaagaaagtggaattcgcaaagttgctcaag
aagcagaaacgtgggaagaaagatgtaacaattactgaagaggtgattacaaaaacttgg
gataccaatgtcatcacgccaggaacaccatttatggatatccttgcacttgcactgcga
tattgggtcgcatataagctaagcactgaccctggttgggaaaagttgaaagtcattatc
tccgatgccacagttccaggggagggagaacacaaaattatggagttcattcgttctcag
cgtgcttgtccagagtatgatcccaatactcggcatgtcatttacggcttggatgccgat
ttgattatgttggggctaggcactcatgagccacacttccgagttttgcgcgaagatgtc
tttttccaggaatcaaaagccagaacttgcaaactatgtgggcaagccggccatgttgaa
gaggcctgcacaggaaaggcgaaagaaaagcgaggggagtttgatgaaaaacaaaaagga
aaccccctgaaaccattcatctggcttcatgtttccgtacttcgtgaatatctggctgta
gaaatgcaggtccctcaacaaccatttccttttgatctcgagagagctttggatgactgg
gtattcatgtgtttcttcgttggtaacgacttcttacctcatcttccgtcgttggagatt
cgtgagaacggcatagatacactcattgcaatttggcgtgataatatcccacaaatgggt
ggctatctaacgaaggatggccgggttgatttggcaaaggcacaattaattttacagggg
ctagccaaacaggaagacgcaatcttccgccgtcggcgacagaccgaggagagaaggaat
gcaaatgctaaacgacgccaggaggaagaccgtcaacgcaggaacaataacaacgaccat
gctcggaagaagcgaagaggctcccgcggtgctgaaccagttccagatattccacctctc
gtcgtacctgggaaaggcgaattatcgagagctgagagagaactgacacacgccatggtt
gtcaaccgcggcgcagtctacaaggctaacatggcaaacaaaagcgctgccgccgctctc
aaggcccagcttttatccggtggcacagcagaagacggcgttgatactacaaatgctcag
gactcagcaccttcagggatacccggctcaaaacttggcaaacgcaagtcggacgtattt
gaaaactcaaatacagaagcggaagcagaagaagaggatgaggaagaggaagacacagtt
gaggtcccggcaaagcccaaagaagatgaaatgcccccggatacggtgcggctgtgggaa
gatggatatgcagaccggtattacgaacagaaattcggagtaagccccaaagatatcgct
ttccgacataaggtagctcgggcatacgttgaaggactgagttgggttcttttgtattat
ttccagggatgtccgtcctggacctggtactacccgtaccactatgcgccatttgccgcc
gactttgttgacattggcgaaatggatgtgcaatttacaaaagggactcctttcaagcca
tttgaacagctgatgggtgtcttacctgcagcttcgaaccatgctattccagaggtattc
cgggacctcatgtctgatgagaacagcgagattatcgacttttaccccgaagatttcccc
gttgacctgaacgggaaaaagtttgcatggcagggagttgctcttttgccatttatcgac
gagaaacgtctactggcagccatgggtaagcggtatcacctgttgtcggaggaagagcaa
gcccgcaatgccatggggaaggatgtactactattgtcagaaaaacaccccctttacgaa
tctctgacagccaatttctactccaaaaagcaagtatcgtcgaagctcaaattgaacatg
cgtatcagcgagggattaggtgggaaagtcgagaagaacgaatcatacctaccccatagt
tctctatccctggaggtggatggcgccgatatccctgcactcgatgaggatcggtcaata
agtgtttactacgaaatgcccaggtccatgcatacccataaatccatgctgcttcggggt
gtcaagttcaaggagccagctcttgacaaggcagatctagagatcaccagaaacaaagct
cgacactctgggcggtcattcggaggagcaccactccattctagccgcggtggtagaggc
aggggaggcggaagaggtggaggccagatatcctacgccagcaacgaccgccccaacccc
tttgctgcacatgtagccccaggctatattcccccaccacacatgggtggagggccacct
gggtacaatcctgcgcccccaaatatgtacaacggccctgatcgataccggtctcaggga
gggtaccctcggggaggcggcggcggcggcggcggcggatacggcggaggatatgggggc
cattaccagcaaccacctccacatagctgggcccaacacgacggcccagcttacaatcac
cctcctcgcaacgcctaccaggaccgcgctcactaccagcgcggcggaagcagcgggtat
gggcgtggcggaggaggaggaggaggatcctatgatggcaggggaggaggaggctactac
ggctccaggggctccgggcgtggtcgaggtcgaggtgacgggtatggcaggtattaa
DBGET
integrated database retrieval system
