Trichophyton benhamiae: ARB_06079 Help Entry ARB_06079         CDS       T01611                                  Name (RefSeq) hypothetical protein   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism abe  Trichophyton benhamiae Pathway abe03018   RNA degradation Brite KEGG Orthology (KO) [BR:abe00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     ARB_06079  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:abe03019]     ARB_06079    03012 Translation factors [BR:abe03012]     ARB_06079 Enzymes [BR:abe01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      ARB_06079 Messenger RNA biogenesis [BR:abe03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      ARB_06079 Translation factors [BR:abe03012]  Eukaryotic type   Initiation factors    Initiation associated factors     ARB_06079 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  HA2_N Helicase_C HA2_C DEAD AAA_22 AAA_19 nSTAND3 SbsC_spectrin-like ABC_tran Motif Other DBs NCBI-GeneID:  9526049 NCBI-ProteinID:  XP_003015768 UniProt:  D4APB2 LinkDB All DBs AA seq 1301 aa AA seqDB search MFIQPSSMPAIPLRLSLRNVRHARRVPNSPYGHSLSAVYRIAQTNGRHLSGGAGRPHTHY ISACTTRGYATDRTSSELSYNRKPQYQSQERHASTQAVDNGSLAGEPSINSSPTESVIYP EPYSRLTETYARENAALPSSESLLALPTLLSKPESSLHTLSQMGIVEIDTDVAKLSDIGA VMCKLYSAENAAYVFLVSALHTKGYLNKIAQSFKTLWDMRAHRFDLSDVYHYASRFASLP EIHYRSTPEPGFTSYAQHEVRIELPGQNIKSVATGDFLPRVVTEASRSFIAQTPRQGIPG NHERIKDDSALTVDVAPNLLNFYLSKYDQSSEIESRCTQENFGPSTVYYGTLYIDGQPVS KPVMADSAKLAKSLARLAGAVHLISKNPSLWPDFINEMRETSPVVHSVSVSMSSETLSAI QTSLENIYYPSPKGQTKTKETCPNNIESLFPNVLASAVRQAESVDPPFLPFSNRPLEESL HARNSLPARKHAKQILDTINEHTVSIIVGSTGSGKTSQIPQMVLEHSPSSNIMVTQPRRV TTTTMARRVAFERGEALGKSVGYEIRWDAIKPSSNNGITYRTTGVMLLDMLRRGDEILDT VSHIFVDETHERDTPTDLLLALLRREINRRSNASMSIPKIIIMTADPETAALETYMGAVS ENGEPNPATRMVIPNSSHPVQRYFLEDILHSLFSNHSAEDLMPLLSDTSTSQHIASEKDL ITPEPSEGNDEAKLPIPNALLEEATANAPINEKEHFVPLGLTAATIAHIAKTEEEGVILA LFPGLDVMKRLETLLYDHPLGVDFSDRTKFQIFKLHSGLGDIDENVLRPAKDGCRKIILS TNIAENSINIPEVRYVVDSGKKHDSVYDPSTGLRKVVGGWVDKLAIHQREACASRTGNGS YYATFTQSRYDALTRSTPPRIYVDEIETESLQLRATLPDLPLRDFMRQVPNPPSLDRLNS TTANLQSIGAIDNNGDITALGRILSLLPVPLKAGKMVMLGILLRCFEPALILGAATHARS LFIPSRSERWYNSPRRKFAGETNSDHIAILRAYRKINQISNKHGQEAARKYCLQHSMSHA TYLDMELFISRITLTLRHLNLIPATESESGENILNENSGDHSVLRALITATVTPNIAIKP SDSGGQWHTKRFPAAVVSNKSTNSFQKSWAGRMLAFNEALNFHSEADAIMMDTTSVHPLM ACLFGGNLSREDNALFLDSHLAVKIKSLDGSMESGSRAASAVVKARKLIDKASEDFFNDL TSNRSWAEAESDRRRLATEIKSIIDTLPDTRQSGPLIRKMP NT seq 3906 nt NT seq  +upstreamnt  +downstreamnt atgtttattcaaccatcctccatgccggccattcccctccggctttcccttagaaatgtc cgccatgctcgaagggtccccaattcaccatatgggcattctttaagcgcagtctataga atagctcaaaccaatgggcgtcacctgtctggaggggccgggcgccctcacactcattat atctctgcatgcaccactcgagggtatgccacagatagaacctcatccgagctatcgtat aaccgcaaacctcaatatcagtcacaagaaagacatgcctcgacgcaggcggtcgataat gggtcattggccggtgagccatccataaattcctcgccgacggaatctgttatatatcca gagccatattccaggttgacggaaacatacgctagggagaatgcggccttgccatcttct gaatcactcttggccttacctactctcctttcgaagccagaatcctcacttcatacactc tcacaaatggggattgttgagattgatacggacgttgccaaactttctgatataggagct gtgatgtgcaaattgtactctgcagaaaatgccgcctacgtttttctcgtgtctgcactc cataccaagggttaccttaacaagattgcacaatcgttcaagaccttatgggacatgaga gcgcaccgctttgatctatcagatgtttaccattatgcttctcggtttgcatccttacct gaaatacactaccgatccacaccggaacctggttttacgtcatacgcccagcatgaagtt aggattgagttgccaggtcaaaatatcaaatctgttgctacgggagatttccttccccgg gtcgtcactgaagcttctcgctccttcatagctcaaacaccacgccagggtattccagga aatcatgagcgaattaaagacgattctgctcttacggtggatgttgctccaaatcttcta aacttttacctgtcaaaatatgatcaatctagcgagattgaatcacgatgtacccaggaa aactttggcccttctacggtctactatgggacactttatatcgatggccaacctgtgtca aaaccggtaatggctgactccgcaaaattagcaaaatcccttgcaaggctcgcaggagct gttcatctcattagcaagaacccgtctctctggccagactttataaatgagatgcgagaa acttcgcccgttgttcactccgtctctgtttcgatgtcttctgaaactctctccgccatc caaacctcactcgaaaatatttactaccctagtcccaaaggccagactaaaactaaagag acctgtccgaacaacattgagtcactgtttccgaatgtccttgcttcagctgtgcgccag gccgagtctgttgatccaccttttctcccgtttagcaaccgtccattggaggagtcgctc cacgcgcgaaattctttgcctgcaaggaagcacgccaagcaaatcctggatacgattaac gaacacactgttagcatcatagttggatctacagggagtgggaaaacatctcaaattccc cagatggtgctggagcactcccctagttccaacataatggtcacccagcctcgcagagtc actactacaactatggcgcggcgagttgcgtttgaacgtggtgaagcgcttgggaaatcc gttggatatgaaattcgatgggatgctataaaaccctcgtcaaacaatggtatcacctat cgaacgactggagttatgttactggatatgttgcggagaggcgatgagattttggacact gtatctcacatttttgttgatgaaacacatgaacgtgatactcctacggacctcctcctc gcgctattaaggagggagatcaaccgacgttccaatgcatccatgtcgattccaaagatc ataattatgactgcagaccccgaaaccgccgcccttgaaacctatatgggagctgtgtcc gaaaatggagaacctaatccagcaactcgcatggtgatcccaaattcctctcatcctgtt cagcgttacttccttgaagacatactgcattctttattctccaatcattctgctgaagat ttgatgcccttactctctgacacatcaacaagccaacatatcgcatccgaaaaggacttg atcactcctgaaccctcggaaggcaatgacgaggctaagctgcctattcctaatgcatta ctagaggaggctacagccaacgccccaatcaacgagaaagagcattttgttcctcttggg ctgactgctgctacgattgctcatattgcgaaaacagaagaggagggcgttatccttgct ctttttcccggccttgacgtgatgaagcgtcttgaaacgttactctatgaccatcctctt ggagttgatttcagcgatcgaaccaaatttcaaattttcaagttacactctggtctgggc gatatcgatgaaaatgtattacgtccagctaaggacggatgccgaaaaataattctgtca acaaatattgctgaaaactcgataaatataccagaggtccgatatgtggtcgatagcggg aagaaacatgattcggtctacgacccgtccactgggctgcggaaagtagttggtggctgg gttgataagctggctatccatcaaagggaagcatgtgcaagccgaactggtaatggttcc tactatgccacattcacacagtcgagatatgacgcattgacgaggagcactcctccccgg atctatgtggacgaaattgaaactgaatctctccagctaagagccactttacccgactta cctctccgcgacttcatgcgtcaggtgccaaatccaccttcgctagatcgtctcaacagt accactgcaaacctgcagtcaattggcgcaatagataataatggtgacatcaccgcgcta ggtcgtatcctatccctattacctgtccctctaaaagctggcaaaatggtcatgctcgga attctattgagatgctttgagcctgccttgatacttggtgctgccacacatgctcgctcc cttttcattccatctcggtctgagagatggtataattcaccgcgccgaaagtttgcagga gaaaccaacagcgaccatatagcaatcttgagagcctatcgaaaaattaaccaaatttcc aacaagcatggacaggaagctgctcggaaatattgcttgcagcactctatgagccatgca acatatctggacatggagttatttatttcacggataaccctcacgcttcgtcatctcaac ctcattccagctacagagagcgagtctggggagaacatcctcaacgaaaactctggcgat cactcggttcttagggcacttatcactgccactgtaaccccaaatattgccatcaagccc agtgatagtggaggccaatggcacaccaagcgcttcccggcagccgtcgttagcaataaa agcacgaattcgttccagaaaagctgggcgggtcgaatgctagcgtttaacgaagccttg aacttccatagtgaggctgacgcaatcatgatggacacgacgtctgttcacccgctgatg gcctgcctttttggtggaaacctttcccgtgaggataatgcacttttccttgactcccat ttagcagtcaaaataaaatctttggatggcagtatggaaagtggctctcgagctgctagt gccgttgttaaggcaaggaaactgatagacaaggcatccgaggatttcttcaacgacctc accagcaacagaagctgggctgaggcggaatctgaccgtcgacgccttgcgacagagatc aaaagcatcatagataccctgcctgatacccgccagtcaggcccgctgatacgaaaaatg ccctaa

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