KEGG   Trichophyton benhamiae: ARB_06670
Entry
ARB_06670         CDS       T01611                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
abe  Trichophyton benhamiae
Pathway
abe03013  Nucleocytoplasmic transport
abe03015  mRNA surveillance pathway
abe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:abe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ARB_06670
  09122 Translation
   03013 Nucleocytoplasmic transport
    ARB_06670
   03015 mRNA surveillance pathway
    ARB_06670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abe03019]
    ARB_06670
   03041 Spliceosome [BR:abe03041]
    ARB_06670
Messenger RNA biogenesis [BR:abe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     ARB_06670
    TREX complex
     ARB_06670
Spliceosome [BR:abe03041]
 Complex C
  Other components
   EJC/TREX
    ARB_06670
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    ARB_06670
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 9527216
NCBI-ProteinID: XP_003014913
UniProt: D4ARD0
LinkDB
AA seq 236 aa
MQIYLTQHNTTQELFTRIGPVYSVALLYDRAGRSEGTAFVTYKRLSDAETAIHEFDGANA
KGQPIRLTLVPSAAPRRRNPFDSAEMPKGSLFDRAERPRGRDSRSLSPDAAEASGGRRGR
RNNTNLAPPENIDRYVPGQRSPIRKHDSGRNRGRRGGGGGGRDSREATGSRNRGSGRTKK
TQEELDQEMEDYWGKANADTAGGASNNAAENQPAAAQAAAQPAPAAGGEEDIDMIE
NT seq 711 nt   +upstreamnt  +downstreamnt
atgcaaatatacctaacacaacacaacacaacacaggagcttttcacccgcattgggcca
gtctattccgtcgcccttctctatgacagagccgggcgctccgaaggcaccgcattcgta
acttacaaacgactctccgacgctgaaaccgccatccatgaattcgacggcgcaaacgcc
aagggccaaccaattcgtctcaccctcgtccccagcgctgccccccgacgccgtaaccca
ttcgactccgccgagatgccaaagggaagcctgttcgatcgtgccgagcggccgcgggga
agagacagtcgtagtcttagcccggatgctgctgaggctagcggtggtcgaagaggtaga
cggaacaataccaaccttgccccgccagaaaacatcgaccggtacgttcctggtcagcga
tcgccgatacggaaacatgattcgggtagaaacaggggtcgccggggtggtggtggtggt
ggcagagacagcagggaagcaactggtagtcggaatcgtggatcggggagaacgaagaag
acgcaggaagagcttgaccaggaaatggaggattactgggggaaagccaacgctgatact
gctggcggtgctagcaataatgccgctgaaaaccagcccgccgctgctcaagctgccgct
cagcctgcccctgcggcgggcggtgaggaagacattgacatgattgagtga

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