Trichophyton benhamiae: ARB_06689 Help Entry ARB_06689         CDS       T01611                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism abe  Trichophyton benhamiae Pathway abe03013   Nucleocytoplasmic transport abe03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:abe00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     ARB_06689    03015 mRNA surveillance pathway     ARB_06689  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:abe03019]     ARB_06689 Enzymes [BR:abe01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      ARB_06689     5.6.2.5  RNA 5'-3' helicase      ARB_06689 Messenger RNA biogenesis [BR:abe03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      ARB_06689    mRNA cycle factors     Common to processing body (P body) and stress granule      ARB_06689 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_12 UPF1_Zn_bind AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD NPHP3_N Helicase_RecD UvrD-helicase AAA_22 SLFN-g3_helicase nSTAND3 AAA_16 TFIIF_alpha PhoH AAA_32 ATPase Motif Other DBs NCBI-GeneID:  9520652 NCBI-ProteinID:  XP_003014930 UniProt:  D4ARE7 LinkDB All DBs AA seq 1080 aa AA seqDB search MEAFNKMGNHMVSDSAATINAGGDDISTVDGEESVLNMAGGPQKRRHDDEDEASDTLDDD DDDDLESMASVAVDGAGKPQASKTEEEKELPAHACGARGNTSSSHIVNHLVRARHKEVQL HPASSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCAAMPSSKDMNWDTSRWQ PLMEDRSFLPWLVSAPSDQEQLRARHLSPQMIAKLEELWKENASATVEDLEKATNVDDEP APVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEAQSQDGLTVRWDLGLNNKHLASFVLPK LELGDVKLAVGDEMRLKYAGELRPKWEGVGYVIKIPNNQSDEVTIELRSKGDHKSVPTEI SHNFTADYVWKATSFDRMQLAMKTFAVDEMSVSGYIFHRLLGNEVAAAPMKTQMPKQFSV PGLPGLNSSQINAVKAVLQKPLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNV AVDQLCECIHRTGLKTVRVTAKSREDVESPVRHLSLHEQVRNNDSNIELVKLNQLKTELG ELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVLIDESTQSAEPE CMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILGCAPIRLNVQYRMH PCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWPVADKPMMFWSNLGNEEISASGTSYL NRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQRSYVVSSMQLTGTFKKEWYKEIEVAS VDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHPLW NYLLRHFKEQNCLVEGPLSNLQTSLIQFSRPKQAYRGPQRFQMSFNHASNVDSSMLNGRN GHHHDYHDAGSVVSYIPDDVSSVHSSALGGVAIPSGYPHMFQNFTESWPSAPNNRRPNGS RMRGAPSVAGESVAATESDVTGSVADGRSTVGQGGVSLSGLSIHDVQKQTSLSQSDRLKR YVESSGRPEPYRGGTDAGSVFGGSAAGIRVPRQNLGHSGDDDDARSVSTAFASQVGGNYD NT seq 3243 nt NT seq  +upstreamnt  +downstreamnt atggaagcgtttaacaagatgggaaaccatatggtttctgactctgcagctacgattaat gctggcggtgacgatatctctacggtggacggtgaagaaagtgtcttgaacatggcgggc gggcctcagaaacgaagacatgacgatgaagacgaagcctctgatactctcgatgatgac gacgatgacgacctggaaagtatggccagtgtggccgttgatggtgccggcaaaccccag gcaagcaaaacagaggaggaaaaggagcttcccgcacacgcttgcggtgctcgtggaaac acgtcctcgtcgcatatcgtgaaccatctggtcagggctcgccacaaggaagttcagctc catcccgcatcatccctcggtgatactatattggaatgctataactgcggaaccaagaat gttttccttcttgggttcattccggcaaagtccgataccgtcgtggtgctcctttgccgc caaccttgcgcggccatgccttcttcaaaggatatgaactgggatacctcccgatggcaa ccactaatggaagaccgttcatttttaccatggcttgtctctgcaccatccgatcaagag cagcttcgagctcgtcacctcagccctcagatgattgctaagttggaggagctctggaag gaaaacgcctcggccaccgtagaggacttggagaaagcaacaaacgtggatgatgaaccc gctccagttttactcagatacgatgacgcctaccaatatcaaaacgtatttggacctctc gtcaaaatcgaagccgactatgaccgtaagttaaaggaggcccagtctcaagatggtctc actgttcgttgggatcttggtctgaacaataagcacctcgccagctttgttctcccaaag ttggagcttggcgatgtgaaacttgctgtcggtgatgagatgcgtctcaagtatgccggg gagcttcgaccgaagtgggagggtgttggatatgttatcaaaatccccaacaaccagtcc gatgaagtcactatcgagctgcgttcaaagggagaccacaagtccgtacctacagagata tcccataactttactgcagattatgtctggaaggccacctcctttgatcgtatgcagctt gcaatgaagaccttcgccgtggacgagatgagcgtgtcaggctacattttccatcgcctg cttggaaacgaggttgcggctgcccctatgaagactcagatgccaaagcaattcagtgtt cctggcctccccggtctcaacagcagtcagattaatgccgtcaaggcagtgttacagaag cccctgagcctgatccagggtccgcctggaactggaaaaaccgttacatcagctaccatt atctaccacctcgcaaaggttaatgcaggccaggtactcgtctgcgcgccatcgaacgtc gctgtcgaccagctatgtgagtgcattcatagaaccggacttaaaactgttcgtgtaact gcaaagtctcgagaagacgttgaatcacccgttcgccacctttcgcttcacgaacaagtt cgcaacaatgatagcaatattgagcttgtcaagcttaaccagctaaagactgagttgggc gaactctccagtcaggatgaaaagaaatataagcagcttacccgtgctgctgagaaggag atcttgactaatgccgacgttatctgctgcacttgcgtcggtgctggcgacccacgacta gcaaagtcgaaattccgcaccgttctaattgatgagtcgacccagtctgcagagccagag tgtatgatcccgcttgttctaggatgcaaacaggctgtccttgtcggtgaccaccagcag cttggacctgtcatcatgaacaagaaggctgctaaagccgggttgaaccaatccctcttt gaacgattggttattctaggatgcgcccctattcgtttgaacgttcagtaccgaatgcac ccctgtctatcccagttctcctcaaatatgttctacgaaggttctctccagaacggtgtc tctagcgaggatcgtctgctcaagaatgtcgacttcccctggccggtcgcagataaacct atgatgttctggtcgaacttgggaaatgaggaaatatcagcctccgggacatcatacctc aaccgcactgaagctgccaacgtcgaaaaaattgttactcgcttcttcaaggctggtgtt aaaccatccggcatcggtattatcaccccatatgaaggtcaacgcagctatgtcgtcagc tctatgcagttgaccggtactttcaaaaaggagtggtacaaagaaatcgaagtcgcatca gtcgatgcgttccagggccgtgaaaaggatttcattgttctttcctgcgtccgatctaac gaccaccaaggaattggtttccttagcgaccctcgtcgtctgaacgtggcccttaccaga gctaagtatggcctggttatcttgggaaatccgaaggtcctttccaagcatccgctgtgg aactacttactacgccatttcaaggaacagaactgccttgtagagggaccactgtctaac ctccagacctctcttattcagttcagccgaccaaagcaagcctatcggggccctcagcgt ttccagatgtcgttcaatcatgcttccaatgttgacagcagcatgttaaatggaagaaat gggcatcatcatgattatcatgatgctggatccgttgtgagctatatcccagatgatgta tcttccgtacattcatcagctctaggcggcgtcgccattccctccggataccctcatatg ttccaaaacttcactgaatcctggccttctgcccccaataaccggcgtccaaacggctct aggatgagaggcgcaccaagcgtcgcaggcgagtccgttgcagctacggagtccgatgtt actggtagtgttgccgatggaagaagtactgtaggccaaggtggagtcagcctctccggc ctaagtatccatgatgtgcagaagcagaccagtctgagtcaatctgatcgtctgaagcgc tacgttgaatcaagcggccgtcctgagccataccgaggcggaactgatgctggaagtgtc tttggtggaagtgctgctggaatccgtgtcccacgccagaacttagggcattccggggat gatgatgatgcccgcagcgtctctaccgcgtttgcaagccaagtcggaggaaactatgac tga

DBGET integrated database retrieval system