Trichophyton benhamiae: ARB_08053
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Entry
ARB_08053 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
abe
Trichophyton benhamiae
Pathway
abe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARB_08053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_08053
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
ARB_08053
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
OB_Dis3
Rrp44_S1
PIN_4
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
9521359
NCBI-ProteinID:
XP_003013941
UniProt:
D4AUY6
LinkDB
All DBs
AA seq
1044 aa
AA seq
DB search
MKSLRRNNSSNPHASNVSSKIFVRSTKSGKVQKIVRELYPRQDIPCSSKLCTACLSYAPT
DANGFVTPFVLSERPAGTKRFPKGHYLIPDTNALLNAMDLFEQTSAFYDVIILQTVLEEL
KNQSLPLYNRLISLIRSEEKRYYLFFNEFRLETHVRRGADESINDRNDRAVRTAAKWYTE
HLQAVTRSSQKEQSAPAIVVITDDKGNRSKADEEGVVALSLTEYISGLEDADRLLDMVNE
SKSAHDAKPKKGEMLYSAYYSMSKIMTLIRAGTLHQGIFNVSPYNYLEGSVNVPAFEKSL
LILGRDNSNRAISGDIVVVEVLPKDQWKTPSSKIIDEEALTKDDNPEAEENEAVVTERER
KALQEEVRKAHGTGTESRPQPTAKVVGIIKRNWRQYVGHIDGSSTSQASSAGRRQQTVFV
IPMDKRVPKIRIRTRQANELMGQRILITIDAWDRDSRYPVGHFVRSLGEVETKGAETEAL
LLEYDVQYRPFPQTVLDCLPPEGHDWKVPKDMSDPGWNDRKDLRDLLVCSIDPPGCQDID
DALHSRPLPNGNFEVGVHIADVSNFVRPNNAMDTEASMRGTTVYLVDKRIDMLPMLLGTD
LCSLKPHVERYAFSVLWEITPDAEVVSSSFTKSVIFSREAFSYEQAQLRIDDQSKTDDLT
ASMRTLLRLSKLLRQKRMDAGALNLASPEVRIETDSELSDPVADVKTKALLDTNSLVEEF
MLLANISVAARIYESFPQTALLRRHATPPPSNFEELITQLSKKRNLTLDVSSSLALANSL
DKCVDERNPFFNTLIRILATRCMTSAEYFCAGAHSESEFRHYGLASPIYTHFTSPIRRYA
DLVVHRQLAAAIGYEGPGASAGEGLTTRSKLEDICKNINHRHRNAQFAGRASIEYYVGQA
LKARGEMEAKRLGSEVAPGVDEEGYVMRVFDNGVVVFIPRFGIEGVVRLEDFVLDGQQAR
VFDPSASKQLAARRESEFDNEQYSLKVWEKEGDEGDEGNKSAPTSKSMVVELFDKVKVNV
SSVKEEKGRGAGKRRVRVLILEKA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtctacggagaaacaactcctcaaaccctcatgcctcgaatgtctccagcaaa
atatttgtgcgttccacaaagagtggcaaggtccagaaaatagtgcgggagctctaccct
agacaagatattccatgctcctcaaaattatgcaccgcatgtctttcatatgcgccgaca
gatgccaatggctttgtcacacctttcgttctctcagagaggcctgctggtacaaagcgg
tttccaaagggccattacttgattcctgacacgaatgctctacttaatgcaatggatctt
tttgaacagacaagtgccttttatgatgttatcattttgcagaccgtgctagaggagctc
aagaaccagtctctacctttatacaaccggctaatatctctgataaggagcgaagagaaa
cgatactacctgttttttaacgaattccgactggaaacccatgtcagaagaggtgcggat
gagagtataaatgaccgcaatgatcgagctgtgagaacagctgcaaagtggtacacagag
catctccaggcggtcacaaggagcagccagaaagaacaaagtgcccctgccatcgtagtg
attacagatgacaagggaaaccgttccaaggcagatgaagagggtgtagttgccctgtcc
ttgacagaatatatatccgggcttgaagatgcagacagactactggacatggtcaatgag
tcaaaatcggctcatgatgctaagccaaagaagggagagatgttatactctgcctattat
tctatgtcaaagataatgacactgataagagctggtactttgcaccaggggatattcaat
gtctctccctacaactatctagagggaagcgtgaatgtccctgcttttgagaaatcactc
cttattctaggaagagataacagcaacagggcgatttctggagatattgttgttgttgag
gtactgcccaaggatcagtggaaaacaccctcctctaaaatcattgatgaggaagcttta
acaaaagatgataatcccgaagctgaagaaaacgaggctgtagtgacagagcgtgagagg
aaagctctacaggaggaggtccggaaagctcatgggacaggaactgaaagccgcccgcag
ccaaccgcgaaggtggtcggtattatcaagagaaactggcgacaatacgttgggcacatt
gatgggtcatctacctcgcaagcttcgtcggccggtcgacgccaacagactgtcttcgtg
attcccatggacaaacgagtgcctaagataagaatacgaactcgacaagcaaacgagctt
atggggcagagaatactgatcacaatagatgcctgggatagggattctcgatatcccgtg
ggtcacttcgtgcgatccctgggagaggtagaaaccaagggcgctgagaccgaggcactt
ttgttggagtatgatgtgcaatacagaccgtttcctcagacagtgctggattgtctaccg
ccggagggccatgattggaaggttccgaaggacatgtcagaccctggatggaatgacagg
aaagacttgagggatttacttgtttgcagtattgacccgcccggttgtcaggatattgat
gatgcacttcactcccggccgttaccaaatggtaactttgaagtcggtgttcatatcgca
gacgtctccaactttgtgcggccaaataatgccatggatacagaagctagcatgcgagga
acaacggtctatctggtagacaagcgaatagacatgcttccaatgctacttggaaccgat
ctctgctctcttaagccccacgttgaacgttacgcattttccgtgttgtgggaaataact
cccgacgcagaggttgtgtcttcgagttttaccaagtccgttatcttttctcgcgaggca
ttcagttatgaacaggctcaattgcgtattgatgatcagtcgaaaacagacgacctaaca
gcaagcatgcgtaccctcctccggctgtctaagttgcttcggcagaagagaatggacgcg
ggagcactaaaccttgcctccccagaggtccgcattgaaacagactcggaactctctgat
cctgttgcagatgtcaagacaaaggctcttttagatacgaacagcctcgttgaagagttc
atgcttctcgccaatatctcagtagctgccaggatctatgaatcgttccctcagacggcc
cttctgcgaagacatgctacaccgccgccttcaaactttgaggagctaataacccagctt
tcgaaaaagcgcaatctgacactcgatgtgtctagctcactagctctagctaattcccta
gacaaatgcgttgacgagagaaatccttttttcaacactctcattcgtatcttagctacg
cgatgcatgacttccgcagaatatttctgcgccggggcacattcagaatccgaattcaga
cattatggacttgcttcgccaatatatacccatttcacgtcgcctattcgacgatatgct
gatcttgttgttcatcgacagctggctgccgccatcggctatgaaggaccaggagcttct
gctggcgaaggactgactactcgaagtaagctagaagatatttgcaagaatatcaaccat
aggcatagaaatgcccagtttgccggccgagccagtatagaatattatgttggccaagcg
ttaaaggccaggggtgagatggaagccaaacgtctcggctctgaagtcgctccaggtgta
gatgaagaaggctacgtgatgcgtgtgtttgataacggcgttgttgtcttcattccacgg
tttggcatcgaaggtgttgtccggctagaagatttcgttttggatgggcagcaagcaagg
gtctttgatccgagtgcaagcaagcagcttgctgccaggagagagagcgagttcgacaat
gagcaatactcccttaaggtttgggagaaagaaggggatgagggagatgaagggaacaag
tcggcgccaacatcaaagagtatggttgttgaattatttgataaagtcaaggttaatgtt
agttccgtcaaggaagaaaagggacgcggagcaggcaaaaggagggtgcgggtgttaatt
ctagagaaggcatga
DBGET
integrated database retrieval system
