Acinetobacter bereziniae: BSR55_09850
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Entry
BSR55_09850 CDS
T06609
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aber
Acinetobacter bereziniae
Pathway
aber03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aber00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSR55_09850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aber03400
]
BSR55_09850
Enzymes [BR:
aber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSR55_09850
DNA repair and recombination proteins [BR:
aber03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSR55_09850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ATZ63632
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All DBs
Position
2102502..2105963
Genome browser
AA seq
1153 aa
AA seq
DB search
MFKQEISDLNLKQLKAGEKRWIGTMLGSSAALLFKEITEKSEQLFVLVARNNQHLTQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLSILANMPQKGILLVSATTLAQRVAPT
SWILGEHFDIKVGQKFDLEQQKLKLVQAGYHLVDTVYDHGEFAVRGSIMDIYASGQSAPI
RIDLFDDEIDSLKFFDPETQRTTTKLEHFTVLPAKEFPLKEARSIFRDRYAESFPTANPK
KNPIYQDVLEGIASPGLDFYFPLFFTQTAMQTQSCLTSYLPSNAIVITDKYIEDGLIQFW
ADVMRRYEDRRHNIDQPLLPPEEIFIQPNQLFEQLNQFARIIASTEQIELKAGCINLSVQ
IPPKLPVDPKQEQPFKVVKQYVDDANHPVLLVAESAGRRETLKDALRASLGEIPVVENFQ
IFQQSNFSVAITNAPLDRGLVISDELSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELNIGAPVVHIDHGVGRYAGLVTLNIDDQDYEFLQLNYADDAKVYVPVTNLHLISRFSGG
DPDLAPLHKLGTDAWNKAKRKALEQIHDVAAELLHIQARRQSKPGISFELDQSAYMQFSS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNRQVAVL
VPTTLLAQQHYESFKDRFADWSIRVEVLSRFGTSKSHVKTIEDLVEGKVDIVIGTHKILQ
ENVQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFGGMRDLSI
IATPPARRLAVKTFVNEQTNETMKEAILRELLRGGQVYILHNEVDTIERAAENIRQLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLMVPSLKGLKGDAEKRLDAISRASNLGAGFMLATEDLEIRGA
GELLGEQQSGSMNAIGYSLYMEMLAKATKAIQQGKTPNFDTPLSLTSEITLHMPALIPDE
YLGDVHQRLMFYKRISNTDTADKLDNIRMELIDRFGVPPQPVKQLFSVHQIRIKAEQLEI
TKIDIGAHGGVIEFSPYTPVQAISIIQMMQKHPTWFRMEGGQRLKVMVMLEEYEKRIQFV
QDLLNNLLAELKR
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaacaagaaatctctgaccttaatttaaaacaactgaaagcaggcgaaaagcgc
tggattggtacaatgcttggttcttctgctgccttactttttaaggaaataacggagaag
tctgagcaactgtttgtgctggtcgcgcgtaataatcagcacttaacacaacttgaaagt
gaacttgaattttatggtgttaaaccgacaatttttccggattgggaaatattgccatat
gatcgtttatcacctcatcaagatattgtgtctgaacggctgtctattcttgccaatatg
ccccaaaaaggtattttgttggtatcggctacaacattggcacagcgtgttgcacctaca
tcatggattttaggggaacattttgatattaaggttggtcagaagtttgatttagaacaa
caaaaattaaaactagttcaagcaggttaccatttagtcgatacggtttatgatcacggt
gagtttgcggtacgcggtagcatcatggatatctatgcatctgggcaaagtgcaccgatt
cgtatagatctgtttgatgatgaaatcgacagtttaaaattttttgatcctgagacccaa
agaaccacaacaaaacttgagcatttcactgtattacccgcaaaagaatttcctttaaaa
gaagcacgctctatatttagagatcgctatgcggaaagctttccaacagcaaatcctaag
aaaaatccaatttatcaagatgtattagagggaattgcatcgccaggattagacttttat
tttccattattttttacccaaactgcaatgcagacacaaagttgtttgacatcgtactta
ccaagcaatgcaattgtcattacagataagtatattgaagacggtttaatccagttttgg
gcagatgtcatgcgtcgttatgaagatagacggcacaatattgatcagccattactgcca
cctgaagaaatttttatacagcccaatcagctgtttgaacagttgaatcaatttgcaaga
attattgcatctacagagcagattgaattaaaagcaggctgtattaatttatctgttcaa
ataccgccaaaattacctgttgatccgaagcaagagcaaccttttaaggtcgtcaagcaa
tatgtcgatgatgccaatcatcctgtgttattggtggctgaaagtgctggacgtcgtgaa
accttaaaagatgcgttaagagcaagtttaggggaaattcctgttgtagagaatttccaa
atttttcagcaatcaaatttttccgttgcgatcacaaacgcgcctttagaccgcggtcta
gtgattagtgatgagttgtcggtaatttctgaaaatcagctttatgaacatcgcgttgta
cagcgccgtcgtaagcgtcaacaggaagtttcagaagagtttttgattcgaagtttgact
gaactgaatattggtgcacctgtggttcatatcgatcatggtgttggtcgttatgcgggt
ttggttacactgaatatcgatgatcaggattatgagtttttgcaactcaactatgcagat
gatgcaaaagtttatgtgcctgtgacaaatctacatcttattagtcgttttagtggtggt
gatccagacttagcgcctttgcataagcttggaactgatgcatggaacaaagcgaaacga
aaagccctcgaacaaattcacgatgtcgctgctgaattattacatattcaagcgcgacgc
cagtcaaaaccgggtatcagttttgaattagatcaaagtgcatatatgcagttttccagt
ggctttgcctatgaagaaacgctagatcaagccaatgcaatcgaagcaacattatatgat
atgcaacaagccaaaccgatggatcgcttggtctgtggtgatgtgggatttggtaaaaca
gaagttgcgatgcgagcagcctttgttgccgttcagaacaatcgacaagtggcggttctt
gttccaaccacattgttggcacaacaacattatgaatcctttaaagaccgatttgctgat
tggtccatccgtgttgaagtactttcacgttttggtaccagtaaaagtcatgtcaaaaca
attgaggatttggtcgagggaaaagttgatattgtcattggaacccacaaaattcttcag
gaaaatgtgcaattcaaaaacttaggtttgatgattgtggatgaagagcatcgttttggt
gtgcgagataaagagcgcattaaagccatgcgtgctgatgtcgatatgctgacattgaca
gctacaccgattccgcggacgctgaatatggcatttgggggaatgcgtgatctttcgatc
attgcaacgccaccggcacgccgtttagctgtgaaaacttttgtcaatgagcaaaccaat
gaaaccatgaaggaagcaattttgcgtgaattgcttcgtggcggtcaggtctacatctta
cataatgaagtagataccattgaacgtgctgcagagaatattcgtcaattggttcctgag
gcacgtgtcgctgttgcacatggtcaaatgcgtgagcgtgaattagaacaagtcatgcag
cagttttatcataaagaatataatgtcttggtgtgttcgaccattattgaaacgggaatt
gatgtgccgaatgccaatacgattatcattgaacgtgctgacaagctagggcttgcgcaa
ttacatcagctgcgtggtcgtgtagggcgctcacatcatcaagcgtatgcatatttgatg
gtaccttcgcttaaaggtctaaaaggtgatgcagaaaaacgtttagacgcaatttcaaga
gcatcaaatcttggtgctgggtttatgttagcgacagaggatttagaaatacgtggcgct
ggtgagttactgggtgaacaacaaagtggttcaatgaatgctatcggttatagtttatat
atggaaatgttggccaaagcgacgaaagccattcaacaaggtaaaacgcctaattttgat
acaccactttcgctcacctctgaaattactttacacatgccagcattaatacctgatgaa
tacttaggtgatgtacatcaacgactgatgttctacaaacggatcagtaatacagataca
gccgacaaattagacaatattcggatggagctgatagaccgttttggtgtgccgccacaa
cccgtcaagcagttatttagtgtgcatcaaatccgtatcaaggcagagcagttagaaatc
accaaaattgatattggggcacatggtggggtgattgaattttcaccttatacacccgtg
caagcaatcagtatcattcaaatgatgcaaaaacatccgacctggttccgtatggaaggt
ggtcaacgtctgaaagtgatggtgatgttggaagaatatgagaagcgcattcagtttgta
caagatttattgaataacttgcttgctgaattaaagcgttaa
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