Aeromonas bestiarum: IU367_08470
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Entry
IU367_08470 CDS
T08822
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abes
Aeromonas bestiarum
Pathway
abes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IU367_08470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abes03019
]
IU367_08470
03009 Ribosome biogenesis [BR:
abes03009
]
IU367_08470
Enzymes [BR:
abes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IU367_08470
Messenger RNA biogenesis [BR:
abes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IU367_08470
Ribosome biogenesis [BR:
abes03009
]
Prokaryotic type
rRNA helicases
IU367_08470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
AAA_30
CMS1
AAA_19
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
WDL84196
LinkDB
All DBs
Position
1820278..1822158
Genome browser
AA seq
626 aa
AA seq
DB search
MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGNRNTQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYETQ
TRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCP
STRQVALFSATMPDQIRRVAQKHLKQPKEIKIITKTSTAPTIRQRYWQVTGLHKLDAMTR
LLEVEPYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
AIEHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMGEELEIYHNLVNELIEEDSADP
LELAAALAKLVQGDQPLLLDESIPEPQFNPSNDRGGRDFERRDGGRDFADRGDRPARRMP
SLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDIADDFSTV
DLPKGMTADVLEVIKKARVCQRPLMITRYTEVPAGSNTAPRPPRSDRPFNKDRRPSGDRP
FNKSGERREGGFNKDRKFGGNKRRDS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacaactgcccctttttagtgagcttggactggccgcgcctgtattg
aaagcgctgcaggacgtgggctatgagcgcccgtcaccgatccaggccgcagcaattccc
cacctgatggcgggacacgatctgctggggcaggcgcaaaccggtacagggaagaccgct
gcttttgccttgcctctgttgtctcgtctggaagctggtaaccgcaatacccaggttttg
gtgctggcaccgacccgtgaactggcgctgcaagttgccgaggcgtgccaacgttacgcc
aagcacatgccggacttccatgttctgcccatctacggtggttcctcttacgaaacccag
acccgcgccctgcgtcgtggtgctcaggttgtcgtgggtacccctggccgtgtgatggac
ctgatccgtcgcaagaacctggacctctccggcctgaaagccctggttctggacgaagcc
gatgaaatgctgcgtatgggcttcatcgacgacgtggactggatcatggaacagtgcccg
agcactcgtcaggtcgcactcttctctgccaccatgccggaccagatccgtcgtgttgcc
cagaagcacctgaagcagccgaaagagatcaagatcatcaccaagacgtccactgcaccg
accatccgccagcgctactggcaggtaaccggtctgcacaagctggacgccatgacccgt
ctgctggaagtcgagccgtacgaagccgtactggtcttcgtgcgcaccaagaacgcggcc
gaagagctggctggcaaactggccgcccgtggtcacgcctgtgaagcgctgcacggtgac
atcccgcagaagctgcgtgagcgtaccgtcgacaagctgcgtcaaggccagctggacatc
ctgatcgccaccgacgttgtcgcccgtggtctggacgttgagcgcatcactcacgtggtg
aactacgacattccgtacgataccgaatcctacgtacaccgtatcggccgtaccggccgt
gctggtcgcaagggtgaggccatcctgtttgttgctccccgtgagcgccgcatgctgcgc
gccatcgagcacgccactcgtcaggccatcgagccgatgaagatgccgagcaccgaggac
atcaaccagcaccgtatgaccaagttcaaagagcgcatccgggaaaccatgatgggcgaa
gagcttgagatctaccacaacctggtgaacgagctgatcgaagaagattctgccgatccg
ctggagctggctgccgcactggccaagctggtgcagggtgaccaaccgctgctgctggat
gagtccatcccagagccgcagttcaacccgagcaacgatcgtggtggccgtgacttcgaa
cgccgtgacggtggtcgtgacttcgccgaccgtggtgatcgtcctgcccgtcgcatgccg
tctctcgaaccgcgtccgctgaaagacaatcctgatgtagagatggagcgttaccgcgta
gacgtgggtgcccatcacggcgtcaagccgggccagatcgtgggcgccatcgccaacgaa
gcgaacatcgagagccgtttcatcggcaacatcgacatcgccgatgacttctccaccgtc
gatctgcccaagggcatgaccgccgatgtactggaagtgatcaagaaagcccgtgtttgt
cagcgtccgctgatgatcacccgctacaccgaagtgccggccggcagcaacactgccccc
cgtccgccgcgcagcgatcgtcccttcaacaaggatcgccgccccagcggtgaccgtccg
ttcaacaagagcggggagcgccgtgaaggtggcttcaacaaggatcgcaagttcggtggc
aacaagcgccgcgacagctaa
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