Aeromonas bestiarum: IU367_09970
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Entry
IU367_09970 CDS
T08822
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abes
Aeromonas bestiarum
Pathway
abes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IU367_09970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abes03019
]
IU367_09970
Enzymes [BR:
abes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IU367_09970
Messenger RNA biogenesis [BR:
abes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IU367_09970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WDL84473
LinkDB
All DBs
Position
complement(2161039..2162442)
Genome browser
AA seq
467 aa
AA seq
DB search
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML
HRLLANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDA
IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER
QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKRELLSHMIG
RNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVA
TDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLKAIE
ALIGLSIPSEILAGYEPSGKPTRQTLPGSKPVQNPPRDRGHANAKHNAKAPAKGKGKPGA
GKPKADGSKQPAPARQKDRGGVDAGLTPMRRLPRAQRDSYQDNSNEE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaacgaactgggtctgtcaccgcatattctgcgggccgtcaaggaattgggt
tacgaacagccaacccccatccagcagcaagccattccggccgtgctggcaggtcaggat
gtgctgggcggcgcccagacaggcacaggcaaaacggccggtttcaccctgcccatgttg
caccgtctgctggccaaccatggccgtggtggccgtcgtcaggtacgcgccctggtattg
accccgacccgtgagctggccgcccaggtgggcgaaagcatcatcaagtacgcccatcac
ttgccgtttcgcaccctgatcgcctacggcggcgtcagcatcaagcccaacctggacgcc
atcaagctcggcgtcgacatcctggtcgcgaccccgggccggctgctggatctgctgacc
cagcgcgccctcaccctgaccgagctggaagtgctggtgctggatgaggcggatcgcatg
ctggacatgggcttcatcaccgacattcgccgcatcatgaaggcgctgccggaagagcgg
cagaccctgctgttctctgccaccttctccaacgagatcaaggagctggccgacgatctg
ctgaagagcccgaccctgatcgaggtaagcccgagcaacagcacggccgagcaggtcaat
cagcgcatcatcaaggtcgaccgcgagcgcaagcgcgagctgctctcccacatgatcggc
cgcaataactggcaacgggtgctggtgttcgtgcgcaccaagcagatcgccgaccgcctc
gcccaccagatggaaaaagacggcctcaataccgtcgccatccacggtgacaagagccag
ggtgcccgcaaccgggcgctggcggattttcgggaaggcaaggtacgggtgctggtcgcc
accgacatcgccgcccgtggtctcgatatcgatcagctgccccatgtgatcaacttcgag
ctgccccaggtggccgaggattatatccaccgcatcggccgtaccggccgtgccggtcgt
ggcggcgaagccatctccctggtgagccaggatgaacaggatcagctcaaggccatcgag
gccctgatcggcctcagcataccgagcgagatcctggcaggctacgagccgagcggcaaa
ccgactcgccagaccctgccgggcagcaagccggtacaaaacccgccgcgggatcgcggc
catgccaacgccaagcacaatgccaaggcgcctgccaagggcaaaggcaagccgggagcc
ggcaagcccaaagccgatggcagcaagcaaccggcgccggcgcgccagaaggatcgcggt
ggcgtggacgcagggctcaccccgatgcgccgcctgccccgggcccagcgcgacagctat
caggacaactccaacgaggagtaa
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