Azospirillum brasilense Sp 7: AMK58_08555
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Entry
AMK58_08555 CDS
T04566
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abf
Azospirillum brasilense Sp 7
Pathway
abf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMK58_08555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abf03400
]
AMK58_08555
Enzymes [BR:
abf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMK58_08555
DNA repair and recombination proteins [BR:
abf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMK58_08555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
AAA_16
UB2H
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALJ35467
UniProt:
A0A0N7I7U5
LinkDB
All DBs
Position
complement(1849603..1853229)
Genome browser
AA seq
1208 aa
AA seq
DB search
MPSFEQLQPGRSGRLLVGGAPAGHDARVLADLAKRAGSAGLLHVALDDTRAAQLAEALAF
FAPSLEVQVFPAWDCLPYDRVSPNGGIVAKRIDTLTRLLARKADAPPLVVLTTVNAMVQK
VPPRAAFRDAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGT
DEPLRLDLFGDELEAVRSFDPMSQRTTDKRDGIDLKPMSEVFLDEAGIARFRSGYRELFG
AVTDDDPLYEAISAGRKYGGMEHWLPLFHETMESLLAYMPKAILSLDHQATEARDSRIAQ
VVDFHASRESMIVIEKRTGSPVYKPVPVGMMFLDAQAWDDLFAAHAVAQLQPFGTPPGIK
GTLDAGGRRGHDFAEERARPDVNVFEAVKDHIRALRADGRRVLVAGYSAGSRDRLMTVLG
DHGIPGLEPAESVEDVRRFDRHVIGMIVLGMEHGFTSADMAVITEQDILGDRLVRPAAKK
KRKAANFIAEYTALASGDLVVHMDHGIGRYDGLETLEVSGAPHDCLRLIYEGGDKLYVPV
ENIEVLTRYGSEDAHAQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKADPVY
TPEGVYQEFAARFPYPETDDQLKAIEEVFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFL
VAMSGQQVAVVVPTTLLARQHFKTFTTRFAGLPLRIVQLSRMVTAKEQTKVKQELTEGTA
DIVIGTHALLGKGVQFKQLGMVIVDEEQHFGVKQKERLKELRADVHVLTLTATPIPRTLQ
MALSGVRELSLIATPPVDRLAVRTFVLPYDPVVVREAILREHYRGGQTFYVCPRVEDLPK
VAERVRELVPEVKIVTAHGQMPASELEEVMTAFDEGKFEVLLATNIIESGIDIPNANTLI
VHRADMFGLAQLYQIRGRVGRSKVRGYAYLTYAPNKPLTGTAQQRLHVIETLDSLGAGFQ
LASHDMDIRGAGNLLGEEQSGHVKEVGVELYQHMLEEAVANARANMDGQVPSGAEDQPWT
PQINLGTPVLIPEEYVPDLTVRLSLYRRIADLVDRAEIDGFAAELIDRFGKLPGEVENLL
DVVTIKQLCRQAGVERVDAGPKGAVLTFRNNSYAEPAKLLTYISQQMSLMKLRPDHKLVY
TREWADEAQRVRGVNRLMSDLAQMAGGGAVPKGEAPPPPPPPPPPRPSALKVGSKFGRNI
PSRPFGRR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgcccagcttcgaacagttgcagccgggacgctccggccgccttctggtcggcggcgcc
cccgccggccatgacgcccgcgtcctcgccgacctcgccaagcgggcggggagtgcggga
cttctccacgtcgcgctcgacgacacccgcgccgcccagctggcggaggcgctggccttc
ttcgcgccgtcgctggaggtgcaggtcttcccggcctgggactgcctgccctacgaccgc
gtgtcgcccaacggcggcatcgtggcgaagcgcatcgacacgctgacccgcctgctggcg
cgcaaggcggacgcgccgccgctggtcgtgctgaccaccgtcaacgccatggtgcagaag
gtgccgccccgcgccgccttccgcgacgcggtgttctcggcgaagctgcgcgaccggatc
gacctggagaagctgcagcgctatctggccggcaacggctacacccgcgcccagacggtg
cgcgagccgggcgagttcgccgtccgcggcggcatcgtcgacctgttcccgccgggcacc
gacgagccgctgcgcctcgacctgttcggggacgagctggaggccgtgcgcagcttcgac
cccatgtcgcagcgcaccaccgacaagcgcgacggcatcgacctcaagccgatgtcggag
gtcttcctggacgaggcgggcatcgcccgcttccgctccggctaccgggagctgttcggc
gccgtcaccgacgacgacccgctctacgaggcgatcagcgccgggcgcaagtacggcggc
atggagcactggctgccgctgttccacgagacgatggaatcgctgctggcctacatgccc
aaggccatcctgtcgctggaccatcaggcgacggaggcgcgcgattcgcgcatcgcgcag
gtggtggacttccacgcctcccgcgagagcatgatcgtcatcgagaagcggacgggctcg
ccggtctacaagccggtgccggtcggcatgatgttcctcgacgcccaggcctgggacgac
ctgttcgccgcccacgcggtggcgcagctccagcccttcggcacgccgccgggcatcaag
ggcacgctggacgccggcgggcgccgcggccacgactttgccgaggagcgggcgcgtccc
gacgtcaacgtcttcgaggcggtgaaggaccacatccgggcgctgcgggccgacgggcgg
cgcgtgctggtggccggctattccgcgggctcccgcgaccgtctgatgacggtgctgggc
gaccacggcattccggggctggagccggcggagagcgtcgaggacgtccgccgcttcgac
cgtcacgtcatcggcatgatcgtgctggggatggaacacggcttcacctccgccgacatg
gccgtcatcaccgagcaggacatcctcggcgaccgcctcgtccgcccggcggcgaagaag
aagcgcaaggccgccaacttcatcgccgaatacacggcgctggcctcgggcgacctcgtg
gtgcacatggaccacggcatcgggcgctacgacgggctggagacgctggaggtgtccggg
gcgccgcacgactgcctgcggctgatctacgagggcggcgacaagctctacgtccccgtc
gagaacatcgaagtgctgacccgctacgggtcggaggacgcgcacgcgcagctcgacaag
ctgggcggggccggctggcagggccgcaaggcccgcgtcaagaagcgcctgaaggacatg
gccgaggcgctgctgaagatcgccgccgagcgcatgctgaagaaggccgacccggtctac
acgccggagggcgtctatcaggagttcgccgcccgcttcccctatccggagacggacgac
cagttgaaggccatcgaggaggtcttcaccgatctcggctcgggccgtccgatggaccgt
ctggtctgcggcgacgtcggcttcggcaagacggaggtggcgctgcgcgccgccttcctc
gtcgccatgagcggccagcaggtcgccgtggtggtgccgaccacgcttctggcgcgccag
catttcaagacctttaccacccgcttcgccgggctgccgctgcgcatcgttcagctttcc
cgcatggtcaccgccaaggagcagaccaaggtcaagcaggagctgacggagggcaccgcc
gacatcgtgatcggcacccacgcgctgctcggcaagggcgtgcagttcaagcagctcggc
atggtcatcgtggacgaggagcagcatttcggcgtgaagcagaaggagcgactgaaggag
ctgcgcgccgacgtgcacgtcctgacgctgaccgccacgccgatcccgcgcacgctccag
atggcgctgtccggcgtgcgcgagctgtcgctgatcgccaccccgccggtggaccgtctg
gcggtgcgcaccttcgtgctgccctacgacccggtggtggtccgcgaggccatcctgcgc
gagcattaccggggcggccagaccttctatgtctgcccccgcgtcgaggacctgcccaag
gtcgccgagcgggtgcgcgagttggtgcccgaggtcaagatcgtcaccgcccacggccag
atgccggccagcgagctggaagaggtgatgaccgccttcgacgagggcaagttcgaggtg
ctgctcgccaccaacatcatcgagagcggcatcgacatccccaacgccaacacgctgatc
gtgcaccgggcggacatgttcggcttggcccagctctaccagatccgcgggcgcgtcggc
cggtcgaaggtgcgcggctacgcctacctcacctacgcgccgaacaagccgctgaccggc
acggcgcagcagcggctgcacgtcatcgagacgctggacagcctgggcgccggcttccag
ctggccagccacgacatggacatccgcggcgccggcaacctgctgggcgaggagcagtcg
ggccacgtcaaggaggtcggcgtcgagctgtaccagcacatgctggaggaggccgtcgcc
aacgcccgcgccaacatggacgggcaggtgccgagcggggcggaggaccagccctggacc
ccgcagatcaacctgggcacgccggtgctgatcccggaggagtatgtccccgacctgacg
gtgcgcctgtcgctctaccgccgcatcgccgatctggtggaccgggcggagatcgacggc
ttcgcggcggagctgatcgaccgcttcggcaagctgccgggcgaggtggagaacctgctg
gacgtcgtcaccatcaagcagctctgccgtcaggcgggggtggagcgggtggacgccggg
ccgaagggcgccgtgctgaccttccgcaacaacagctacgccgagccggccaagctgctg
acctacatcagccagcagatgagcctgatgaagctgcgccccgaccacaagctggtctac
acccgcgaatgggccgacgaggcccagcgggtgcgcggcgtcaaccggctgatgagcgat
ctggcgcagatggccggcggcggcgccgtgccgaagggtgaggcgccaccgcccccgcca
cccccgccgccgccgcgccccagcgcgctgaaggtcgggtccaagttcgggcggaacatc
ccctcgcgtcccttcgggcggcgctga
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