Azospirillum brasilense Sp7: AMK58_10715
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Entry
AMK58_10715 CDS
T04566
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
abf
Azospirillum brasilense Sp7
Pathway
abf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMK58_10715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abf03019
]
AMK58_10715
03009 Ribosome biogenesis [BR:
abf03009
]
AMK58_10715
Enzymes [BR:
abf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AMK58_10715
Messenger RNA biogenesis [BR:
abf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMK58_10715
Ribosome biogenesis [BR:
abf03009
]
Prokaryotic type
rRNA processing factors
AMK58_10715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALJ35848
UniProt:
A0A0P0F7D2
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All DBs
Position
2314182..2317355
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AA seq
1057 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVNGNRLEDLDFEIATRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPIADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPD
VVVEENSPMPGSYAETEGDGFEGDIPAFATDAGSDGGSDEAADSDEAPEGAAPAESPDVI
GGDEVEEAHRRRARPLRSYKIQEVIKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVL
MPNTGRGGGISRKITNPADRKRLKEILSDLDIPEGMAVILRTAGLERSKQEIKRDLEYLL
RLWDDIRVQTLKSSAPCLIYEEANLIKRSIRDLYTDDIDEIWVEGSAGFNTARDFMRMMM
PSHTKRVMQYQDDTIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGK
STRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRLKEAMK
NDRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVIRSVESASLHVLRAIE
EEGIRKRSSEITVFVPTRIALYILNQKRGELTKIEDRYRFRVMVQADDTLIAPDLRLERV
KARTPEDDVPLVSAERVLAETDRILAAEAEEAEEEAPVVEAAEVAGAEVAERADAAGESE
GDRRRRRRRRRGRGRDREDGRAPFGESAEVSDEATEGDEVEAEAADADDETAVDEEAIER
AQIDAPEFVINDVDVGPAHIEDDEDEEADLAASEAEDGADAFETNGDGDGNGERKKRRRG
KRGGRRRSRQREGLESGEGLPTDGTEGEAEAESFPTAVEAGRAVNPPELPADMEPVEFDW
VLTSAVAAEAAPETAADTAAEGPAEEAAPVVEEAPARKPRRGRAKAIAAEAAEAVTAQAV
TAEPEAAPAKPKRAAKGAAKDAKAAAKAAAPEETAPPPAKPSRSRKAKTAAAEAAPAPAP
APVAAPVAEEPKKRPARKRKTAADAPAEAAPAPAPVAAPVAEEPKKRPARKRKTAADAPA
EAAPAPAVSEAPAAPAPSNEPASAAPEAKPRRGWWSR
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaggaaacccgggttgccgtggtc
aatgggaacagactcgaagacctcgacttcgaaatcgccacccggaagcaactcaagggc
aacatctaccttgccaaggtgacccgggtcgagccgtcgctccaggcggccttcgtggaa
tatggcgggaaccgccacggcttcctcgccttctcggaaatccaccccgactactaccgc
atcccgatcgccgaccgtgaggccctgctggccgaggagcgccggctcgaggagcaggcc
gaggcccgcgccgaggccgccgccgatggcgcggtgatggccgagccgatccgcccggat
gtggtggtcgaggaaaattccccgatgcccggctcctacgccgagaccgagggcgacggg
ttcgaaggcgacatcccggccttcgccaccgacgccggttcggacggtggttcggacgag
gccgcggactcggacgaggctccggaaggcgccgctccggccgagagcccggacgtcatc
ggcggggacgaggtcgaggaggcccaccgccgccgcgcccgcccgctgcgcagctacaag
atccaggaggtcatcaagcgccggcaggtcatgctggtccaggtgaccaaggaggagcgc
ggcaacaagggtgcggcgctgaccacctacctgtcgctgcccggccgctactgcgtgctg
atgcccaacacgggccgcggcggcgggatttcccgcaagatcaccaacccggccgaccgc
aagcgcctgaaggagatcctgtccgatctcgacattccggaaggcatggcggtcatcctg
cgcaccgcggggctggagcgctctaagcaggaaatcaagcgcgacctcgaatatctgctg
cgcctgtgggacgacatccgcgtccagacgctgaagtcctccgcgccctgcctcatctat
gaggaggcgaacctcatcaagcgctcgatccgcgatctctacaccgatgacatcgacgag
atctgggtggagggcagcgccggcttcaacaccgcgcgcgacttcatgcgcatgatgatg
ccgagccacaccaagcgcgtcatgcagtatcaggacgacacgatcccgctgttccaccgc
tatcaggtggaaacgcagatcgacgcgatccacagcccggtcgtgcagctccgctccggc
ggctacatcgtcatcaacccgaccgaggcgctggtttccatcgacgtcaactcgggcaag
tcgacgcgagagcgcaacatcgaggaaacggcctacaagaccaacctcgaagccgccgac
gaggtggcgcgccagctccgcctgcgtgaccttgcgggcctcatcgtgatcgatttcatc
gacatggaggagccccgcaacaacgccgcggtggagcgccgcctgaaggaggcgatgaag
aacgaccgggcgcgcatccagctcggccgcatctccgccttcggcctgctggaactgtcg
cgccagcgcctgcgcccgtccctgctggaaaccaacttcgagcgctgcccgcactgctcc
ggcaccggcgtcatccgctcggtggagtccgcctcgctgcacgtgctgcgcgccatcgag
gaggagggcatccgcaagcggtcgtcggagatcaccgtcttcgtgccgacccgcatcgcc
ctctacatcctcaaccagaagcgcggggagctgaccaagatcgaggaccgctaccggttc
cgcgtcatggtccaggccgacgacacgctgatcgcgccggacctgcggcttgagcgcgtg
aaggcccgcacgccggaggacgacgtgccgctggtcagcgccgagcgcgtcctggccgag
accgaccgcatcctggccgccgaggccgaggaggccgaggaagaggcgcccgtcgtcgag
gccgccgaggtcgccggggccgaggtggcggaacgcgccgacgccgccggggagagcgag
ggcgaccgccgccgccgccgccgccgccgccgtggccgcgggcgtgaccgcgaggatggc
cgcgcgccgttcggcgagtccgccgaagtgtccgacgaggcgaccgagggcgacgaggtc
gaagcggaggctgccgacgccgacgacgagacggcggtcgacgaggaagccatcgagcgc
gcccagatcgacgctccggagttcgtcatcaacgacgtcgatgtcggccccgcccacatc
gaggacgacgaggatgaggaggccgacctggccgcgtccgaggcggaagacggcgccgac
gccttcgagacgaacggcgacggcgacggcaacggcgagcgcaagaagcgccgccgcggc
aagcgcggtggtcgccggcggtcccgccagcgcgagggcctggagtccggcgagggtctg
cccaccgacggcaccgagggcgaggcggaagccgagtccttcccgaccgccgtcgaggcc
ggccgcgccgtcaacccgccggaactgccggcggacatggaaccggtcgagttcgactgg
gtcctgaccagcgccgtggccgccgaggctgctccggaaaccgccgcggacaccgccgcg
gagggtcccgccgaggaagccgccccggtggtcgaggaggctccggcccgcaagccgcgc
cgtggccgcgccaaggcaatcgccgccgaggccgccgaagcggtgacggcccaagcggta
acggcggaaccggaagcggcccccgccaagccgaagcgcgccgcgaagggcgccgccaag
gatgccaaggccgctgcgaaggccgccgctccggaggaaaccgctccgccgccggccaag
ccgtcgcgcagccgcaaggcgaagaccgcagccgccgaggccgcccctgcccctgccccg
gcgccggttgcggccccggtcgccgaggagccgaagaagcgcccggcgcgcaagcgcaag
accgcggcggacgctcccgccgaggcggcgcctgctccggccccggttgcggctccggtc
gccgaggagccgaagaagcgcccggcgcgcaagcgcaagaccgcggcggacgctcccgcc
gaggcggcgcccgctccggcggtcagcgaggcgccggcggccccggccccgtccaatgag
ccggccagcgccgctccggaggccaagccgcgccggggttggtggagccgctaa
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