Azospirillum brasilense Sp 7: AMK58_16065
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Entry
AMK58_16065 CDS
T04566
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
abf
Azospirillum brasilense Sp 7
Pathway
abf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMK58_16065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abf03019
]
AMK58_16065
03016 Transfer RNA biogenesis [BR:
abf03016
]
AMK58_16065
Enzymes [BR:
abf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AMK58_16065
Messenger RNA biogenesis [BR:
abf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMK58_16065
Transfer RNA biogenesis [BR:
abf03016
]
Prokaryotic type
tRNA degradation factors
AMK58_16065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
ALJ37020
UniProt:
A0ABU4P7I5
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All DBs
Position
ABSP7_p1:complement(516109..518409)
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AA seq
766 aa
AA seq
DB search
MARTPLNDTPRRSGSFPDKDMVLSFIRSSTTPVGKRELARAFKLSGSDDRERLKALLKEL
EADGSVERGRNKRVAPPQSLPEVAVLEVTGTDADGEVTARPVTWTGEGNPPRIFLMPERK
GHPTLGTGDRVLAKLNRINDRLYEARTIRRLDGTVGRVLGVYYPAADGGRIVPTDKRNKT
ELLVLPANRNDAEPGELVLADLLPAARLGLPQARVAERLGHTAEPRAVSLIAIHTHGLPT
DFPPAALREASHAAVPSLTGRTDLRHIPLVTIDGADARDFDDAVWAEPDPDPANQGGWHL
LVAIADVAFYVRPNSALDRTAFERGNSVYFPDRVVPMLPEALSNDLCSLRPQEDRACVAA
HLWIDRYGALLRHRFVRGLMRSAARLTYEQVQAARDGVPDEATAPLLETVIAPLYGAFAC
LWAARQRRGTLELDLPERRVRLDERGRVAEIAPRERLDSHRLIEEFMICANVAAADSLER
AGMPGLFRVHDQPSLDKQETLREFLTGIGYSLPRVPRLTPAHFTAVLDRAAGTAESQLVS
EVILRSQSQAEYSPENIGHFGLSLDRYAHFTSPIRRYADLIVHRALIRAHGLGPGGLDDA
AMAGLTDIGEHISMTERRAATAERDAIDRFTAAFLADRVGALFTGRISGVTRFGLFIRLD
ENGADGLIPASTLPDDQYEHDERAHALVGQRTGRSYRLGAAVKVVLMEADPLTGSTLFAL
PRAEGASAGDFVGSTDHPLQSSHPDRPPRSARFAGRATQKQRKRGR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcacgaactcccttgaacgacacgccacgccgctccggcagctttcccgacaaggac
atggtcctctccttcatccgatccagcacgacaccggtcggcaagcgcgaactcgcgcgc
gccttcaagctgtctggcagcgacgatcgcgagcgactgaaggcacttctcaaggagttg
gaggccgacggttccgtggagcgtgggcgcaacaagcgcgtcgccccgccgcagtcgctg
ccggaggtcgccgtgctggaggtgaccggcaccgatgcggacggcgaggttaccgcccgc
ccggtcacctggaccggcgagggcaacccgccgcgcatcttcctgatgcctgagcggaag
ggccacccgacactggggacgggcgaccgggtgctggcgaagctgaaccgcatcaacgac
cggctttacgaagcgcgcaccatccggcggttggacggcacggtgggacgcgtcctcggc
gtttattaccccgccgcggacggcgggcgcatcgtccccacagacaagcgcaacaagacc
gaactgctggtcctgccggccaaccgcaacgacgccgagccgggcgaactggtgctggcc
gacctgctgcccgccgcccggctggggctgccgcaggcccgcgtggcggagcggctgggc
cacaccgcggagccgcgcgccgtcagcctgatcgccatccacacccacgggttgcccacc
gacttcccgcccgccgccctgcgcgaggcatcgcacgccgccgtgccctccctgaccgga
cggaccgacctgcggcacattccgctggtgaccatcgacggcgccgacgcccgcgatttc
gacgacgcggtatgggcggagccggaccccgacccggcgaaccagggcggctggcacctc
ctcgtcgccatcgccgacgtggccttctacgtgcgcccgaactcggcgctggaccgcacg
gccttcgagcgcggcaactccgtctatttccccgaccgcgtcgtgccgatgctgcccgaa
gcgctgtccaacgacctctgctcgctgcgcccgcaggaggatcgcgcctgtgtcgcggcg
catctgtggatcgaccgctacggcgcgctcctgcggcatcgctttgtgcgcggcctgatg
cgctccgccgcgcgcctgacctacgagcaggtacaagccgcccgcgatggagtgccggac
gaggcgacggcaccgcttttggagacggtcatcgcccccctctacggcgccttcgcctgt
ctgtgggcggcccggcagcggcgcggcacgctggaactcgacctgccggaacggcgtgtg
aggctggacgagcgcgggcgggtggcggaaatcgcgccgcgcgaacgcctcgacagccac
cggctgattgaggaattcatgatctgcgccaacgtcgcggcggcggacagtctggagcgg
gcgggcatgcccggcctgttccgcgtgcacgaccagccgtcgctcgacaagcaggagacg
ctgcgggaattcctgaccggcatcggctactcgctgccgcgggtgccccggctgaccccg
gcccatttcaccgcggtcctcgaccgcgccgccggcacggcggaatcgcaactggtcagc
gaggtgatcctgcgcagccagtcgcaggccgaatacagcccggagaacatcggccatttt
ggcctgtcgctcgaccgctacgctcatttcacctcgccgatccgccgctacgccgacctg
atcgtccatcgcgcattgatccgcgcccacggtctggggccgggtgggctggacgacgcg
gccatggccgggctgaccgacatcggcgagcacatctcgatgaccgaacgccgcgccgcc
accgccgagcgcgacgccatcgaccgcttcaccgccgccttcctggccgaccgtgtgggc
gccctcttcaccgggcggatttccggggtcacccgcttcggcctgttcatccggctggac
gagaacggggcggacgggctgatacccgccagcactctgcccgacgaccagtatgagcat
gacgagcgcgcccacgccctggtcgggcaacgtacggggcgcagctaccggctgggcgcc
gcggtgaaggtggttctgatggaggccgatccgttgaccggaagcaccctgttcgccctg
ccccgcgccgagggcgcttccgccggggatttcgttggcagcaccgatcatccgttgcaa
tccagccaccctgaccgccccccgcgaagcgcccgtttcgcgggccgcgcaacccagaag
caacggaagcgtggccgctga
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