Asaia bogorensis: Asbog_00120
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Entry
Asbog_00120 CDS
T04138
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
abg
Asaia bogorensis
Pathway
abg03410
Base excision repair
abg03430
Mismatch repair
abg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Asbog_00120 (recJ)
03430 Mismatch repair
Asbog_00120 (recJ)
03440 Homologous recombination
Asbog_00120 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abg03400
]
Asbog_00120 (recJ)
DNA repair and recombination proteins [BR:
abg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Asbog_00120 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Asbog_00120 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Asbog_00120 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ATPgrasp_N
LytB_SH3
Motif
Other DBs
NCBI-ProteinID:
BAT18436
UniProt:
A0AAN4R206
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Position
complement(131331..133139)
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AA seq
602 aa
AA seq
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MSDAPTIIASPEPVLSVHESGSQRSWVWRDDRLASGDGRIALAIAQRAAIPELLARILHS
RGVDAARIPAFLDPKLRDWLPDPSCLTGMNDAALRLANAVKGGETIGVFGDYDVDGACGT
TLLTETLRELGCPVFFHIPDRQKEGYGPNGPALEGLRAKGASLLICVDCGTAAVDLLTSL
KEGGDIIVLDHHKPDGAILPDCLVVNPNRLDCESGLGHLCATSVAFLTLIATCRTLRASG
WFDAHEEPALLRKLDLVALATICDVMPLRDLNRAFVAQGLRVMGRGERLGLSTLASVAGV
KETASAMACGFAIGPRINAGGRIAQAELGVKLLLSDDAFEARALAEKLDEINRQRQTVEA
DILNDAYAQAEAQLEAGHAALFLHGEDWHPGVVGIVASRVRERCNRPVLVGALQDGRIKG
SARSVPGIDLGAAVINACQSGLLLTGGGHAMAAGFSLDAARAAEFHQFLDEALAPAKLRP
RHDSLCIDGVLTLRGATTEIAAQLARLGPFGAGHEEPVIAISRVRAVKTERIGRDGNTLR
VILQGEDGGRLRGLVFRAADKAFAALLEDRAMPVLHVAGQLRCEQWNGQDMLSFFILDAA
TI
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgctcctacgatcatcgcttcgccagaaccggttctttctgtccacgaaagt
ggtagtcagcgttcctgggtctggcgcgatgacaggctggccagcggtgatggtcgcatc
gccctggccatcgcgcaacgcgccgccattcccgaattactggcccgcatcctgcatagc
cgcggggtcgatgccgcccgtattcctgcttttctcgacccgaaactgcgtgactggttg
ccagacccgtcctgcctgacaggcatgaacgatgctgccctgcgactggccaatgccgtc
aaggggggtgagaccattggcgtcttcggtgattacgatgtcgacggcgcctgcggcacc
accctcctgaccgaaacccttcgcgagctggggtgtccggtctttttccatattcccgac
cggcagaaggaaggttacggccccaacgggccagccctggaaggcctgcgcgccaaaggg
gcgagcctgcttatctgtgtcgattgtgggacggccgccgttgatctgctcaccagcctc
aaagagggtggtgatatcattgtgctggaccatcacaagccagacggggccattctgcct
gactgtctggtggtcaaccccaaccgcctcgattgcgagtcggggctggggcatctttgc
gccacgagcgttgccttccttacgctgattgctacctgccggacgttgcgcgcgtcgggc
tggtttgacgcgcatgaggagcctgccctgctgcgcaagctcgatctggtggcactggcc
accatctgcgatgtgatgcccctgcgcgacctcaaccgcgctttcgtcgcccaaggcctg
cgcgtgatgggccgtggcgagcggctgggcctatccaccctggcttccgtggcaggggtg
aaagaaacagccagcgccatggcctgtggctttgccatcgggccacgaatcaatgcgggc
ggccgtattgcgcaagccgaactcggggtaaagctgctcctgagcgacgatgcgttcgag
gcccgggcgctggccgaaaagctcgatgaaatcaaccggcagcgccagactgtcgaggca
gatatcctcaacgatgcctatgcccaagccgaagcgcagctagaggctggtcacgcggcc
ctgttcctgcatggcgaggactggcatccgggtgttgtaggtatcgtcgccagtcgtgtc
cgtgagcgttgcaacaggcctgtgctggttggcgcccttcaagatggcaggatcaagggc
tcggcccgctctgtgccgggcatcgaccttggcgcggctgtgatcaatgcctgccagtcg
gggttgctgcttaccggtggcggtcacgccatggcggccgggttctccctcgacgcagca
agggcagctgaatttcaccagttccttgacgaggcgcttgctccggccaaactccgcccg
cgtcacgactcactttgcatagacggcgtactgacccttcgcggggcaacgacggaaatt
gccgcacaactggcacgcctcggccccttcggggctggccatgaagagccggtcattgcc
atcagccgcgttcgtgccgtcaagaccgagcgtatcgggcgcgatggcaacacgctgcgt
gtcatcctgcagggcgaggatggtggcaggctgcgtggtctggtcttccgcgccgcagac
aaggctttcgctgccctgctggaagaccgggccatgccggtgcttcacgtggcggggcaa
ctgcgctgcgagcagtggaacggtcaggatatgctgagcttttttattttggacgctgcc
acgatttag
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