Asaia bogorensis: Asbog_01290
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Entry
Asbog_01290 CDS
T04138
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abg
Asaia bogorensis
Pathway
abg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asbog_01290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abg03019
]
Asbog_01290
Enzymes [BR:
abg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Asbog_01290
Messenger RNA biogenesis [BR:
abg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Asbog_01290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
SUa-2TM
AAA_22
P-loop_SecA
SPBC1E8_03c_N
Motif
Other DBs
NCBI-ProteinID:
BAT19564
UniProt:
A0AAN4R3C8
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All DBs
Position
1423306..1424652
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AA seq
448 aa
AA seq
DB search
MTSFADLQLAMPIQRALSEEGYTNPTPIQAGSIPYLLQGRDLLGLAQTGTGKTAAFALPA
LHRLATHHRPLTPKGARVLVLAPTRELAAQIDDSFKAYARHMKLRHAVIFGGVGQGRQVE
AMRRGVDVLTAAPGRLLDLIGQGHIDLHDLEMLVLDEADRMLDMGFVRDIRRIVALLPKE
RQTVLFSATMPKAIEELAHSLLRDPAKVEVTPPSSTVDRIRQAVMFVKAEDKRAATLLLV
KNEKVQRAVVFTLMKHEANKVADFLNAEGIRAEAIHGNKSQGARERAMAGFRDGSVKVLV
ATDIAARGIDVDDVSHVFNYDLPNIAESYVHRIGRTARAGRDGWAVTLCDAEQRAWLRDI
EKLIGKEIPVVSDHPFHSQEAQDSTMRPPVLGGGGRGRNQPRGGGQRAGGGGRPGGGQRP
GGGNGRPGGAPRHGGGGKPSGNRPPRSR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaccagttttgccgatcttcagctcgccatgcccattcagcgtgccctgagcgaagag
ggttacaccaacccaacgccgattcaggcaggctccatcccgtacctgttgcaggggcgc
gatcttttggggctcgcccagacaggcaccggcaagacggcagcctttgcgcttcccgct
ctccatcgtcttgcaacccatcatcgccccctgacacccaagggtgcccgcgtgctcgtg
cttgcgccgacccgtgagctggcagcccagattgacgacagcttcaaggcatatgcccgt
catatgaagcttcgccacgctgtcatctttggcggtgtcggccaggggcggcaggtcgag
gcaatgcgacgtggcgtcgatgtgctgactgcggcacccggccgcctgctcgatctgatc
ggtcagggtcatatcgatctgcatgatctcgagatgctggtgctcgacgaggccgatcgt
atgctcgatatgggcttcgtccgcgatatccgccgcatcgtggcactgctccccaaggag
cgtcagacggtcctgttctccgccaccatgccgaaggctatcgaggagctcgcgcattcg
cttctgcgtgacccggccaaggtggaggtgaccccgccatcctcgacggtggaccgcatt
cgtcaggccgtgatgttcgtcaaggctgaggacaagcgcgccgcaacactgctgctggtc
aagaatgagaaggtccagcgcgctgtggtcttcacgctcatgaagcatgaagcgaacaag
gtggccgacttcctcaacgctgaaggtattcgcgccgaggcaatccacggcaacaagtcg
cagggcgcacgtgagcgtgcgatggcaggttttcgtgatggatcggtcaaggtccttgtc
gcgactgatatcgcagcgcgcggcatcgacgtcgacgacgtgagccatgtgttcaattac
gatctgcccaatatcgccgagagctatgtccatcgcatcgggcgtaccgcccgtgccggg
cgtgatggatgggctgtgaccctgtgcgatgcggagcagcgcgcctggctgcgtgatatt
gaaaagcttattggcaaggaaatcccggtggtgagcgatcaccccttccattcgcaggag
gcgcaggactccacaatgcgcccgcccgtactgggtggcggtggacgtggccgtaaccag
ccgcgtggtggagggcagcgcgcaggcggtggtggtcgtccgggtggtggtcagcgtccg
ggtggcggcaatggtcgccccggtggcgcgccgcgtcatggcggtgggggtaagccttcg
ggaaatcgtcctccgcgttcgcgctaa
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