Asaia bogorensis: Asbog_02076
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Entry
Asbog_02076 CDS
T04138
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
abg
Asaia bogorensis
Pathway
abg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asbog_02076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abg03019
]
Asbog_02076
03016 Transfer RNA biogenesis [BR:
abg03016
]
Asbog_02076
Enzymes [BR:
abg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Asbog_02076
Messenger RNA biogenesis [BR:
abg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Asbog_02076
Transfer RNA biogenesis [BR:
abg03016
]
Prokaryotic type
tRNA degradation factors
Asbog_02076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
CCDC47
Motif
Other DBs
NCBI-ProteinID:
BAT20332
UniProt:
A0AAN4R3B1
LinkDB
All DBs
Position
complement(2298888..2301041)
Genome browser
AA seq
717 aa
AA seq
DB search
MFNYFRKEIDWAGRPLVLETGKIARQADGAVVATYGDTVVLCTAVGAKSVKPGQDFFPMT
VNYQEKAYAAGRIPGGFFKREGRPSESETLISRLIDRPIRPLFPENFRNEVQVTATVLSH
DMENDPALVALIGCSAALTLSGIPFYGPVGVARVARINDQLVINPTIAEMKESALDLVVA
GTSEGVLMVESEASELSEEIMLEAVTAGHAAFQPVIDAIIDLAEHAAKQPWDLEGPTKEQ
IALRKRVEKIGTKLMADAYKEKAKQARYEKIATAKARIIEGLTEEGLDVDMAKPMLKELE
AQVVRGAILKTGIRIDGRDTKTVRPIVSEVGILPRAHGSSLFTRGETQALVVATLGTTQD
EQIIDALEGEYRSNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRALHPLLPGKDRF
PYTVRIVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGYAVLSDI
LGDEDHLGDMDFKVAGTESGITALQMDIKITSITPEIMKVALEQARDGRIHILGEMAKAI
DEGREGVSRNAPKITTMNIAKEKIRDVIGSGGKVIREIVEFSGAKVDINDEGVITIAASN
DEQAQKAISRIEGIVAEPEIGRIYDGKVVKTADFGAFVNFLGPRDGLVHISELTDGRVAK
TTDVVKQGDAVKVKVVGFDDRGKVKLSMRVVDQQTGADISESVGAKAARPTRQRDAD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactacttccgcaaggaaatcgactgggccggacgcccgctcgttctggaaacc
ggcaagattgcccgtcaggctgatggtgcggttgtcgccacctatggcgatacggtcgtg
ctctgcaccgccgttggcgccaagtcggtcaagccgggccaggacttcttcccgatgacc
gtcaactatcaggaaaaggcctatgcagctggccgtattcctggtggcttcttcaagcgt
gagggccgtccgtccgagagcgagaccctgatctcgcgtctgatcgaccgtccgatccgc
ccgctcttccctgagaacttccgcaatgaagtgcaggtcacggcgaccgttctcagccat
gacatggaaaacgaccccgcactggttgcgctgatcggctgctcagccgcgctcaccctt
tcgggtattcccttctatggtccggttggcgtggcgcgcgtagcccgcatcaatgaccag
ctcgtcatcaacccgaccattgcggagatgaaggagagcgcgctcgatctcgtcgtcgcc
gggacgagcgaaggcgtgctgatggttgaatccgaagcttccgagctttcggaagagatc
atgctcgaagccgtgaccgctggccatgcagccttccagcccgtgatcgatgcgatcatc
gatctggccgagcacgccgccaagcagccctgggacctcgaaggccccaccaaggagcag
atcgccctgcgcaagcgcgtggagaagattggcaccaagctgatggccgacgcctataag
gaaaaggccaagcaggcacgctacgagaagatcgcgaccgccaaggcgcgcattatcgaa
ggcctgaccgaggaaggtctggacgtcgacatggccaagccgatgctcaaggagcttgag
gcccaggtcgttcgcggcgccatcctgaagaccggcatccgtatcgacggtcgcgacacc
aagacggtgcgcccgatcgtgtccgaagtcggcatcctgccgcgcgcccatggctcctcg
ctctttacgcgtggtgagacgcaggctctggttgttgccacgctgggcaccacccaggac
gagcagatcatcgacgcccttgaaggcgagtaccgctcgaacttcatgctgcattacaac
ttcccaccctattcggttggtgagtgcggccgcatgggaagcccgggccgtcgcgagatc
ggccatggcaagctggcatggcgtgccctgcatccgctgctgccgggcaaggaccgcttc
ccctacacggtgcgtatcgtttccgagatcaccgagagcaacgggtcgtcctcgatggcc
accgtttgcggctcctcgctggcgctgatggatgccggcgtgccgctgccgcgccccgtc
gccggtatcgccatgggtctgatcaaggaagatcgtggctacgccgtgctgtctgacatc
ctgggtgacgaagatcatcttggtgacatggacttcaaggtggccggtaccgaatccggt
atcactgcgctgcagatggatatcaagatcacctcgatcacgccggaaatcatgaaggtg
gcgctcgagcaggcccgtgacggtcgtatccacatcctcggcgagatggccaaggcgatc
gatgaaggtcgtgagggggtctcgcgcaatgcgccgaagatcaccaccatgaacatcgcc
aaggagaagatccgcgatgtgatcggctcgggtggcaaggtcattcgcgagatcgtcgag
ttctcgggcgctaaggttgatatcaacgacgaaggtgtcatcactatcgctgcatcgaat
gacgagcaggcccagaaggccatctcgcgcatcgaaggcatcgtggctgagccggaaatc
ggccgtatctacgatggcaaggttgtcaagaccgccgatttcggtgcgttcgtgaacttc
ctcgggccgcgcgacggtctggtgcatatttccgagctgaccgatggtcgcgttgccaag
accaccgatgtcgtgaagcagggcgacgctgtgaaggtgaaggttgtcggtttcgacgac
cgcggcaaggtcaagctgtcgatgcgcgttgtcgatcagcagaccggcgccgatatctcg
gagagcgtcggtgcaaaggccgctcgtccgaccaggcagcgtgacgctgactga
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