Asaia bogorensis: Asbog_02701
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Entry
Asbog_02701 CDS
T04138
Name
(GenBank) DNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
abg
Asaia bogorensis
Brite
KEGG Orthology (KO) [BR:
abg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abg03019
]
Asbog_02701
Enzymes [BR:
abg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Asbog_02701
Messenger RNA biogenesis [BR:
abg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Asbog_02701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_30
ResIII
Flavi_DEAD
AAA_22
HalX
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAT20945
UniProt:
A0A0P0YJG1
LinkDB
All DBs
Position
3047568..3050096
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AA seq
842 aa
AA seq
DB search
MTGPLLPANLISLPVLPVCAALPELQAVLDAGRNAVLVAPPGAGKTTLVPLHLLQAPWRE
EGRLIVVEPRRVAVRGAAHRMAALLGEATGQTVGYRTRTDSAVSAATRIEVVTEGLLLRR
LLTDPLLEGVSAILFDEVHERSLDLDTALGFALDLQRTMRPELRLVAMSATTDGRAFTSL
LDGVLVESEGRAFALDIRHARRDIAALRELPDVMARTIRSLLAEEEGDILAFLPGVGEIR
RCAAALADAPALIVPLYGELDTREQDLALKPAERRKVVLSTSIAETSLTVPGVRIVVDGG
FARAPRLDAGSGLSRLETMRISRATATQRAGRAGREAPGIAVRLWTEATGRALIAHDLPE
IQTSDLTGHCLDLAAWHEVMGTPPAAVPLLDTPPAGAFQAGCALLTALGALDEAEKITPL
GAAMARLGAQPRLAAMMCAARTPPEKATAAALAALLEERDPLRPRIVPGQRSPSVPADIQ
TRLGLIEGAEHHPHADRASLARIRQSAQRYQKRLGLSQRLAPDPASAAALLAAGFPDRVA
MAAGETGRYRLSGGGSARLSAIDPLARETLIVAPALHVRTATEICLAAPLDLDNLPATLL
ARTEDQVETALDTTTGNVIARRRLRLGNLVLRDRSAPAKPEEVQALLLSRIRADLAGSLA
WSESCQQFRARLALARAHLDETLPAADDETLAATLDEWLLPYIDGMTKLSQIQALDLLPL
LRQRLDYTQLKQLDQALPTSLILPGAQPAIDYRDATPTISARAQAFYGLKETPRIANGRI
KLQFALLSPAGRPQAITADIAAFWTTGWADMRRDMRGRYPKHDWPENPATASPPPPRRRR
DT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgaccggtcccctattgcccgccaatctcatttcgcttcccgttcttcctgtctgtgct
gccctgcccgagcttcaggccgtgctcgatgccggacgcaatgccgtactggttgcgccg
cccggcgcaggcaagaccactttggtgccgcttcatcttttacaagccccctggcgcgag
gaaggacgcctgatcgtcgtcgagccccggcgtgttgccgtgcgtggggccgcccatcgc
atggccgccctgctgggcgaagccacaggccagacagtcggttatcgcacgcgcacggat
tcggctgtgagcgcggccaccagaatcgaggtggtgacagaagggctgctgctgcgacgc
ctgctgaccgacccgctgctcgagggcgtgtcggccattctgttcgacgaggtgcatgaa
cgctcgctcgatctcgatacagcgcttggtttcgcgctcgatctgcaacgcaccatgcgc
cccgaactccgtctcgtggccatgtcggccacaacggatgggcgagcctttacctctctg
ctcgatggcgtcctggtcgagagcgaaggccgcgcctttgcgctggacatacgtcacgcc
agacgggacatcgcagccctgcgcgaactgcccgatgtcatggcgcgcaccatacgcagc
ctgctggctgaggaggaaggcgatattctggccttcctgcccggtgtcggcgaaatcagg
cgctgtgccgcagcactggctgatgccccggcactgatcgtccccctctatggtgaactc
gatacccgcgagcaggatctggccctcaaacctgccgaaaggcgcaaggtggtgctgtcc
acctcgattgcagaaacctcgctcaccgtacccggcgtccgtatcgtggtggatggcgga
tttgcccgtgcgccgcgtctcgatgccgggtccggcctgtcacggctcgagaccatgcgc
atctcgcgggccacggcgacacagcgtgccgggcgcgccggacgcgaggcgccaggcatt
gcggtacgtctgtggacagaagccactggccgcgccctgattgcccatgatctgcccgaa
atccagaccagcgacctgaccggccattgccttgaccttgctgcatggcacgaagtcatg
ggcacgcccccagccgctgtgcctttgctcgatacaccgcctgccggtgcctttcaggcc
ggctgcgccctgcttacggcgctcggggcattggatgaggcagaaaagatcacgccgcta
ggcgccgctatggcacggctcggcgcacagccccgtctggctgcaatgatgtgcgcagcc
cgtaccccacccgaaaaggccaccgccgccgccctcgccgcccttctggaggaacgcgac
ccgctgcgcccgcgtatcgtccccggtcagcgcagcccctcggtacccgccgatatccag
acgcgtcttggcctgatcgagggcgccgagcatcacccccatgccgaccgggcgagcctt
gcccgcatccggcaatccgcccagcgctatcagaagcgcctcgggctgagccagcgtctt
gcgcccgaccccgccagcgcggcggccctgcttgccgcaggctttccggatcgcgtagcc
atggccgcgggcgaaacgggacgatatcgcctgtcgggaggaggatcggcccggctgagc
gccatcgacccgctggcgcgcgaaaccctgatcgtagcccctgcccttcatgtgcgtacg
gcaaccgaaatctgcctcgccgccccgctcgatctcgataacctgcctgcaaccttgctg
gcccgtacggaagaccaggtcgagaccgcgcttgatacgacaaccggcaatgtcattgcc
cgcagaaggcttcgccttggcaatctggtgctgcgcgaccgttctgccccggcaaagccg
gaggaggtgcaggcgctgttgctgtcacgcatacgcgccgatctggctggcagcctcgcc
tggtccgagtcatgccagcaatttcgtgcccggctcgccctggcgcgggcccatctcgat
gagaccctgcctgccgccgatgacgaaacccttgccgccactctcgatgagtggctgctc
ccctatatcgatggcatgacgaaactcagccagatacaggcgctggacctgctgcccctc
ctgcggcaacgcctcgactacacccagctcaaacagctcgatcaggctttaccgacgagc
ctcatcctgcccggggcacaacccgctatcgattatcgcgatgccacacccacgatctcg
gcccgtgctcaggctttctacgggctgaaggagacaccacgcatcgccaatgggcgcatc
aagctgcaatttgccctgttgtcacctgccggtcgcccgcaggccatcactgccgatatc
gccgccttctggaccacgggctgggccgacatgcgacgcgacatgcgcggccgttacccg
aaacatgactggccggaaaaccccgcgacagccagcccgcccccgcccagacgtcgacgc
gacacctga
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