Acinetobacter baumannii TYTH-1: M3Q_2003
Help
Entry
M3Q_2003 CDS
T02261
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abh
Acinetobacter baumannii TYTH-1
Pathway
abh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M3Q_2003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abh03400
]
M3Q_2003
Enzymes [BR:
abh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M3Q_2003
DNA repair and recombination proteins [BR:
abh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M3Q_2003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFU38095
LinkDB
All DBs
Position
2117017..2120478
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIATQHSSLLVLVARNNQHVAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGVLLISASTLAQRVAPY
SWVLGEHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQESPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEGRSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFNKEQMQSQSMFTTYLPKNCIVITTNDIDTDLTSFW
KEVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRMLVSAETIEEKAGALNLKTE
QPPKLPVDPKKEKPFSAVKKYIDEANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFQISQFAIAITNAPLDRGLLLTDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEEYEKRIQFI
NDLLQKLMSELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttgcaacagctcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagcagctttattgcttaaagaaattgccactcaa
cattcttctttattggtattagttgctagaaacaaccaacatgttgctcaattagaaagt
gaacttgagttttatggagttaagccgacaatttttccggattgggaaattttgccttat
gaccgtttatctccccatcaagatattgtgtcagaacgtcttgctattttatctaatatg
cctcagcaaggcgtattactgatttcagcaagtaccttggctcaacgggttgcaccttac
tcatgggtattgggagaacactttgatataaaagtgggtcaaaaatttgatttagaacaa
caaaaattaaggttagttcaggcgggctaccacttagtagatacagtttatgaccatggt
gagtttgctgtacgcggcagtattatggatatttttgcatctgggcaagaatctccaatc
cgcatagatttatttgacgatgaaattgattctttaaaattctttgacccagaaactcaa
agaacaacaaccacgctaaaaagttttacggttttacccgcgaaagaattccctttaaaa
gaaggacgttcagtttttagagaccgttattctgagttttttcctactgccaatcctaag
aaaaatccaatttatcaggacgttttagatggtatagcatcgcctggtattgaattttat
ttaccgctattttttaataaagaacaaatgcagtcacaaagtatgtttacaacatactta
ccaaagaattgcattgtaattacaactaatgatattgatactgatttaacgagtttctgg
aaagaagttatgcgtcgttatgaagaccgacgccataatatggatcaacctattcttgct
ccagaagagctatttatttctccaaatcatctgctaagtgctctaaaccagtttccacga
atgcttgtgagcgcagaaactattgaagaaaaagctggtgcacttaatcttaaaactgaa
caaccacccaagttgccagtcgatccgaaaaaagaaaaaccatttagtgccgtaaaaaaa
tatattgatgaagcaaatcatcctgttctattggttgcggaaagtgcaggacgtcgtgaa
agcttaaaagatgcgttgcgttcaagtttaggtgagattccgaatgtagagaattttgag
caattccaaattagtcagtttgcaattgctattactaatgcgcctctagatcgtggctta
cttttaactgatcaattaacggttatttcagaaaatcagctttacgagcaccgagttgta
cagcgtcgtcgcaagcgtcaacaggaagtttccgaagagtttctgattcgaagcttaact
gagctaagcattggtgctcctgttgtacatatcgatcatggtgtggggcgttatgctggc
ttaattacactcgcgattgagggacaagactatgagttcttacaactagattatgccgaa
gatgcaaaagtctatgttccagtaacgaacttgcatctaattagccgttatagtggtggc
gacccggatttagcaccgttacataaaatcggaactgatgcttggagtaaagctaagcgt
aaagcattagaacaaattcatgacgttgcagctgagcttttacatattcaggcacgtcgt
cagtcaaaacctggctttgcttttgaactggatcagtcgctctatatgcaatttgcaagc
ggttttgcgtatgaagaaacccttgatcaggctaatgcaattgaagccacgctctatgat
atgcagcaagcaaaaccaatggataggttggtgtgtggtgatgtgggttttgggaaaacc
gaggtggccatgcgtgcagcatttgtcgcagtacaaaatggcaaacaggttgctgtttta
gttcctacgactttactagctcaacaacattatgagtcttttaaagaccgttttgctgat
tggccagtacgtattgaagtgctctcacgttttggttcaaacaaaacacatttgaaaaat
attgaagacttggcaaatggtaaagtcgacattgtggtaggtacacataagcttctacaa
gagaatgttcagtttaaagatttaggcttaatggttgtagacgaggagcatcgctttggt
gtgcgtgataaggagcgtatcaaagctttacgtgccgatgttgatatgttgacacttaca
gcaacgccaattcctcgtacgcttaatatggctttttcgggtatgcgtgatttgtcgatt
attgcgactccgccagcccgtcgattagcagtaaaaacctttgtgcaagagcatacagat
gcttcaatcaaggaagcgattttgcgtgagttacttcgtggtggacaagtttatttctta
cataatgaagtagagaccattgagcgagctgccgaaaatattcgtgtgcttgtacccgaa
gcacgtgtagcggtagcacatggacaaatgcgtgaacgcgaacttgagcaagttatgcag
cagttctatcacaaagaatataatgtgctggtgtgctcaaccattattgagacaggtatc
gatgttccaaatgccaatacaattttgattgaacgtgcggataaacttggtttagcgcaa
ttacaccagttacgtggccgtgtaggtcgttcgcatcaccaagcatacgcgtatttatta
gtaccttcgattaaacacttaaaaggtgatgccgaaaaacgccttgatgcgattcaacgt
gcttcgacattaggtgcaggctttatgctcgctacggaagatttggaaattcgtggagca
ggcgaattgttaggcgagcaacaaagtggctcaatgcaggcgataggatatagcttgtat
atggaaatgcttgagaaagcgactaaagcaattcaacagggtaaaaccccgaattttgat
gctccattgtcgttaactgccgaaattaacttacatattcctgcacttattccagatgat
tatctgggtgatgttcatcaacgtctattattctataaacgtattagtaataccgataca
caggaaaaactagataacatccgtatggagcttattgaccgtttcggtattccaccgcag
tcggttaagcacttatttagcgtgcatcaaatccgtttgaaagcagaacatttaggtatt
acgaaaattgatattaatactcaaggtggaaatattgagttttcaccagatacgccagtt
caggccattagtattattcagttaatgcaaaaaaatccgacttattaccgtatggaaggc
ggacaacgtttgaaggtgatggtgcagcttgaagagtatgaaaaacgaattcaatttatc
aatgatttattgcaaaaattgatgagtgaactacatgcctga
DBGET
integrated database retrieval system
